View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_18 (Length: 360)
Name: NF9165_low_18
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 45390245 - 45390556
Alignment:
| Q |
10 |
gaatgttcacaggttgtaactcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacgaaaagaacacttac |
109 |
Q |
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| T |
45390245 |
gaatgttcacaggttgtaactcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacaaaaagaacacttaa |
45390344 |
T |
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| Q |
110 |
aatattttccttaatacatgtaaaaaatgacaaaagatgtttgtataggtcctgtctttaaaaacagacgtaggtggtcgcttattgttttaatgacaac |
209 |
Q |
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| T |
45390345 |
aatattttccttaatacatgtaaaaaatgacaaaagatgtttgtataggtcctgtctttaaaaacagacgtaggtggtcgcttattgttttaatgacaac |
45390444 |
T |
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| Q |
210 |
aaaattttaattacaaagtgatcttatgctactaatataaagtattttcttgagtatgtgttacaaataataggatataatatgaagcaagtgatgactg |
309 |
Q |
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| T |
45390445 |
aaaattttaat------------------tactaatataaagtattttcttgagtatgtgttacaaataataggatataatatcaagcaag-------tg |
45390519 |
T |
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| Q |
310 |
atgacattggaagggcataaatccacttaggatgagt |
346 |
Q |
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| T |
45390520 |
atgacattggaagggcataaatccacttaggatgagt |
45390556 |
T |
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