View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9165_low_24 (Length: 304)

Name: NF9165_low_24
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9165_low_24
NF9165_low_24
[»] chr8 (5 HSPs)
chr8 (95-287)||(20136132-20136324)
chr8 (45-134)||(20136025-20136114)
chr8 (45-132)||(20135875-20135962)
chr8 (15-88)||(20135938-20136011)
chr8 (15-88)||(20136088-20136161)
[»] chr7 (5 HSPs)
chr7 (95-287)||(44355747-44355939)
chr7 (45-134)||(44355957-44356046)
chr7 (45-132)||(44356109-44356196)
chr7 (15-88)||(44356060-44356133)
chr7 (15-88)||(44355910-44355983)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 95 - 287
Target Start/End: Original strand, 20136132 - 20136324
Alignment:
Q  95 tgtagcactaaaaaatactgtagcagctgatgtttctgttcatgaaattcaactacaacagaaggttgtttcgaatatgcaaaatgttactgtgcggtgg 194  Q
    |||||| ||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20136132 tgtagcgctaaaaaatatggcagcagctgacgtttctgttcatgaaattcaactacaacagaaggttgtttcgaatatgcaaaatgttactgtgccgtgg 20136231  T
Q  195 agccttgattggatatctcagttggctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggt 287  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20136232 agccttgattggttatctcaattgcctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggt 20136324  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 20136025 - 20136114
Alignment:
Q  45 aaatttttggaacctgtagcgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgtagcagctgatgtttctgtt 134  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20136025 aaatttttggaacctgtaacgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgcagcagctgatgtttctgtt 20136114  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 20135875 - 20135962
Alignment:
Q  45 aaatttttggaacctgtagcgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgtagcagctgatgtttctg 132  Q
    |||||||||||||||| ||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||  | |||||||||||||||    
T  20135875 aaatttttggaacctgaagcgccaaaaaattctgcagcagctgatgttcatgtagtgctaaaaaatactacatcagctgatgtttctg 20135962  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 20135938 - 20136011
Alignment:
Q  15 aatactacagcggctggtgtttctgatgtcaaatttttggaacctgtagcgctaaaaaatactggagcagctga 88  Q
    ||||||||| | |||| |||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||    
T  20135938 aatactacatcagctgatgtttctgatgtcaaaattttggaacctgtagggctaaaaaatattgcagcagctga 20136011  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 20136088 - 20136161
Alignment:
Q  15 aatactacagcggctggtgtttctgatgtcaaatttttggaacctgtagcgctaaaaaatactggagcagctga 88  Q
    |||||| |||| |||| |||||||| | ||||| |||||||||||||||||||||||||||  | |||||||||    
T  20136088 aatactgcagcagctgatgtttctgttatcaaaattttggaacctgtagcgctaaaaaatatggcagcagctga 20136161  T

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Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 95 - 287
Target Start/End: Complemental strand, 44355939 - 44355747
Alignment:
Q  95 tgtagcactaaaaaatactgtagcagctgatgtttctgttcatgaaattcaactacaacagaaggttgtttcgaatatgcaaaatgttactgtgcggtgg 194  Q
    |||||| ||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44355939 tgtagcgctaaaaaatatggcagcagctgacgtttctgttcatgaaattcaactacaacagaaggttgtttcgaatatgcaaaatgttactgtgccgtgg 44355840  T
Q  195 agccttgattggatatctcagttggctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggt 287  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44355839 agccttgattggttatctcaattgcctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggt 44355747  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 44356046 - 44355957
Alignment:
Q  45 aaatttttggaacctgtagcgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgtagcagctgatgtttctgtt 134  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44356046 aaatttttggaacctgtaacgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgcagcagctgatgtttctgtt 44355957  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 44356196 - 44356109
Alignment:
Q  45 aaatttttggaacctgtagcgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgtagcagctgatgtttctg 132  Q
    |||||||||||||||| ||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||  | |||||||||||||||    
T  44356196 aaatttttggaacctgaagcgccaaaaaattctgcagcagctgatgttcatgtagtgctaaaaaatactacatcagctgatgtttctg 44356109  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 44356133 - 44356060
Alignment:
Q  15 aatactacagcggctggtgtttctgatgtcaaatttttggaacctgtagcgctaaaaaatactggagcagctga 88  Q
    ||||||||| | |||| |||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||    
T  44356133 aatactacatcagctgatgtttctgatgtcaaaattttggaacctgtagggctaaaaaatattgcagcagctga 44356060  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 44355983 - 44355910
Alignment:
Q  15 aatactacagcggctggtgtttctgatgtcaaatttttggaacctgtagcgctaaaaaatactggagcagctga 88  Q
    |||||| |||| |||| |||||||| | ||||| |||||||||||||||||||||||||||  | |||||||||    
T  44355983 aatactgcagcagctgatgtttctgttatcaaaattttggaacctgtagcgctaaaaaatatggcagcagctga 44355910  T

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