View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_27 (Length: 290)
Name: NF9165_low_27
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_27 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0142 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 23009564 - 23009836
Alignment:
| Q |
1 |
attataaccttccgcacaacaggcttatacttttccaaatatttgccttttaatttaaatactctattgtcgaaatcaaatcgctttgacaaattgttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23009564 |
attataaccttccgcacaacaggcttatacttttccaaatatttgccttttaatttaaatactctattgtcgaaatcaaatcgctttgacaaattgttaa |
23009663 |
T |
|
| Q |
101 |
tggcgaaaatttcaaaaatttcaggataagaatatggctcattagaatctaattcttctccttcttcccccacaagttttggcattgacaattttgtcga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23009664 |
tggcgaaaatttcaaaaatttcaggataagaatatggctcattagaatctaattcttctccttctgcccccacaagttttggcattgacaattttgtcga |
23009763 |
T |
|
| Q |
201 |
agggcattcaataggaaccagtttatccttaatctcaatcaattcatgtagtttctacttagaaactttatat |
273 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||| ||||||||||| |
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| T |
23009764 |
agggcattcaataggaaccaatttatccttaatctcaatcaattcctgaagtttctatttataaactttatat |
23009836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 272
Target Start/End: Original strand, 24666817 - 24666969
Alignment:
| Q |
121 |
tcaggataagaatatggctcattagaatctaattcttctccttcttcccccacaagttttggcattgacaattttgtcgaaggg----cattcaatagga |
216 |
Q |
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|||||||||||||||| ||| |||| ||| ||||| |||||| |||| ||||||||||| ||||||||||||||||||||| |||||||| || |
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| T |
24666817 |
tcaggataagaatatgactcgctagagtcttattct---ccttctgcccctacaagttttggaattgacaattttgtcgaagggaattaattcaatatga |
24666913 |
T |
|
| Q |
217 |
accagtttatccttaatctcaatcaattcatgtagtttctacttagaaactttata |
272 |
Q |
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|| | ||||||||| || ||||||||||| |||| ||| | |||||||| ||||| |
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| T |
24666914 |
actaatttatccttgatttcaatcaattcctgtaatttatgtttagaaaccttata |
24666969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 13015804 - 13015921
Alignment:
| Q |
156 |
ttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagtttatccttaatctcaatcaattcatgtagtttc |
255 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||| || || |||||||| | || |||| |
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| T |
13015804 |
ttctccttctgcccccacaagttttggcattgacaattttgtagaaggacattcagtaggaaccaatttatccttgatttctatcaattcctttaatttc |
13015903 |
T |
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| Q |
256 |
tacttagaaactttatat |
273 |
Q |
| |
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|| |||||||| |||||| |
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| T |
13015904 |
tatttagaaaccttatat |
13015921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 13015641 - 13015694
Alignment:
| Q |
14 |
gcacaacaggcttatacttttccaaatatttgccttttaatttaaatactctat |
67 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||| |||| |||| | ||||||| |
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| T |
13015641 |
gcacaacaagcttatatttttccaaatatttgccatttattttacacactctat |
13015694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 22712259 - 22712122
Alignment:
| Q |
133 |
tatggctcattagaatctaattcttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagtttatccttaa |
232 |
Q |
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|
||||||||| |||||||| ||||| | ||||||||| | ||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |
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| T |
22712259 |
tatggctcactagaatctgattct---ctttcttccccaaaaagttttggcattgacatttttatcgaaaggcattcaataggaaccaatttatccttaa |
22712163 |
T |
|
| Q |
233 |
tctcaatcaattcatgtagtttctacttagaaactttatat |
273 |
Q |
| |
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| || |||||||| |||| |||| | ||||||| ||||||| |
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| T |
22712162 |
tttctatcaattcctgtaatttccatttagaaattttatat |
22712122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 273
Target Start/End: Original strand, 13271960 - 13272073
Alignment:
| Q |
160 |
ccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagtttatccttaatctcaatcaattcatgtagtttctact |
259 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||| || || || ||||| ||||||| ||| | | |
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| T |
13271960 |
ccttcttctcccacaggttttggcattgacaattttgtcgaagggcattcagtgggaaccaatttatcattgatttctatcaactcatgtaatttatgtt |
13272059 |
T |
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| Q |
260 |
tagaaactttatat |
273 |
Q |
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|||||| ||||||| |
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| T |
13272060 |
tagaaattttatat |
13272073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 48836 - 48687
Alignment:
| Q |
121 |
tcaggataagaatatggctcattagaatctaattcttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaacca |
220 |
Q |
| |
|
|||| ||||||| ||||||||||||| || |||||| |||||| |||||| |||||||| ||||||||||| | ||| | | ||||||||||| || | |
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| T |
48836 |
tcagcataagaacatggctcattagagtcaaattct---ccttctgcccccaaaagttttgacattgacaattctatcgtatgacattcaatagggacta |
48740 |
T |
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| Q |
221 |
gtttatccttaatctcaatcaattcatgtagtttctacttagaaactttatat |
273 |
Q |
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||||||||| || | || |||||||||| ||||| |||||||| |||||| |
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| T |
48739 |
atttatccttgatttatattaattcatgtaatttctgtttagaaaccttatat |
48687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 20862022 - 20862091
Alignment:
| Q |
156 |
ttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagttta |
225 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||| |||| |
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|
| T |
20862022 |
ttctctttctgcccccacaagttttggcattaacaattttgccgaagggcattcagtaggacccaattta |
20862091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 22617840 - 22617760
Alignment:
| Q |
156 |
ttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagtttatccttaatctc |
236 |
Q |
| |
|
|||||||| | |||||||||||||||| ||| || ||||||||||||||||| | ||||||||| |||||| || ||||| |
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|
| T |
22617840 |
ttctccttttgcccccacaagttttggtattaaccattttgtcgaagggcatctagtaggaaccaatttatctttgatctc |
22617760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 14929431 - 14929489
Alignment:
| Q |
162 |
ttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaacca |
220 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||| ||||||||||||| |||||||||||| |
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|
| T |
14929431 |
ttctgcccccacaagtttttgcattaactattatgtcgaagggcatccaataggaacca |
14929489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 14695 - 14766
Alignment:
| Q |
156 |
ttctccttcttcccccacaagttttggcattgacaattttgtcgaagggcattcaataggaaccagtttatc |
227 |
Q |
| |
|
|||||||| || || |||||||||||||||| || | | |||||||||||||||| |||||| || |||||| |
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|
| T |
14695 |
ttctccttgtttccacacaagttttggcattaaccactatgtcgaagggcattcagtaggaatcaatttatc |
14766 |
T |
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