View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_3 (Length: 667)
Name: NF9165_low_3
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 27381185 - 27381565
Alignment:
| Q |
17 |
cagagacagagagagtaaagtgaagcatttaaagcttctaacatcaaagacagagaaagagtgtgtttgtgtttatgtgccatgtgtttttctaacagag |
116 |
Q |
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| T |
27381185 |
cagagacagagagagtaaagtgaagcatttaaagcttctaacatcaaagacagagaaagagtgtgtttgtgtttatgtgccatgtgtttttctaacagag |
27381284 |
T |
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| Q |
117 |
gaagagaaatttcannnnnnnnnnnngaggtagtattgttttctagtcttgtagaggtagtaggagtattaaatatgattatgatatttatagtgacatg |
216 |
Q |
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| T |
27381285 |
gaagagaaatttcattttttatttttgaggtagtattgttttctagtcttgtagaggtagtaggagtattaaatatgattatgatatttatagtgacatg |
27381384 |
T |
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| Q |
217 |
tggaatttaaatattgaaatttagg--------------agtatattgcatcattaaaattgaaatattataaatattggttttcttggtgaagatttgt |
302 |
Q |
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| T |
27381385 |
tggaatttaaatattgaaatttaggagtagtaggataggagtatattgcatcattaaaattgaaatattataaatagtggttttcttggtgaagatttgt |
27381484 |
T |
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| Q |
303 |
ctattaggtaagagcttgggtcgaaatcttgctcttatttttctatagagaattctttctattgttgatgtataagtcgta |
383 |
Q |
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| T |
27381485 |
ctattaggtatgagcttgggttgaaatcttgctcttatttttctatagagaattttttctattgtttatgtataagtcgta |
27381565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 448 - 651
Target Start/End: Original strand, 27381630 - 27381830
Alignment:
| Q |
448 |
aatttaactaaactttaattgatatgtaaagaaatcagaacgctactcctttctttgtaagnnnnnnnattctttaaggcttttgaacacaaattaaaat |
547 |
Q |
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| T |
27381630 |
aatttaactaaactttaattgatatgaaaagaaatcagaaggctactcctttctttgtat-attttttattcttta-ggtttttgaacacagattaaaat |
27381727 |
T |
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| Q |
548 |
ttattcaatactgtaggtaatattggtataaaatactcttaatttaatcatannnnnnnagaaaatcataattattttataaattatcactttttaatat |
647 |
Q |
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| T |
27381728 |
ttattaaatactgtagataatattggtataaaatactcttaatttaatcatatttttttagaaaatcataattattttataaattatcac-ttttaatat |
27381826 |
T |
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| Q |
648 |
aaat |
651 |
Q |
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|||| |
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| T |
27381827 |
aaat |
27381830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 27389649 - 27389744
Alignment:
| Q |
207 |
tagtgacatgtggaatttaaatattgaaatttaggagtatattgcatcattaaaattgaaatattataaatattggttttcttggtgaagatttgtct |
304 |
Q |
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| T |
27389649 |
tagtgacgtgtggaatttaaatattggaattcaggagtat--tgcatcatttatattgaaatattataaatattggtttttttggtgaagatttgtct |
27389744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 503
Target Start/End: Original strand, 27389957 - 27390004
Alignment:
| Q |
456 |
taaactttaattgatatgtaaagaaatcagaacgctactcctttcttt |
503 |
Q |
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| T |
27389957 |
taaactttaattgatatgaaaagaaattagaatgccactcctttcttt |
27390004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 27389865 - 27389893
Alignment:
| Q |
349 |
agagaattctttctattgttgatgtataa |
377 |
Q |
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| T |
27389865 |
agagaattctttctattgttgatgtataa |
27389893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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