View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_33 (Length: 244)
Name: NF9165_low_33
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3341250 - 3341476
Alignment:
| Q |
1 |
atgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaatagcagtgaagatatattgagtaaggatgatgtatgtaataaagg |
100 |
Q |
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| T |
3341250 |
atgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaaaagcagtgaagatatattgagtaaggatgatgtatgtaataaagg |
3341349 |
T |
|
| Q |
101 |
attagatgaaatgttcaagcagtacaatgaaattgatatctacagtctttacacccctacttgcttagccaacaaggggatttcaaaaccaatgcaaaag |
200 |
Q |
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| T |
3341350 |
attagatgaaatgttcaagcagtacaatgaaattgatatctacagtctctacacccctacttgcttagccaacaaggggatttcaaaaccaatgcaaaag |
3341449 |
T |
|
| Q |
201 |
gttatgaagcgttcatcaaacaaagac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3341450 |
gttatgaagcgttcatcaaacaaagac |
3341476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 8349318 - 8349358
Alignment:
| Q |
105 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
145 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| |
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| T |
8349318 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
8349358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 42820303 - 42820263
Alignment:
| Q |
105 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
145 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| |
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| T |
42820303 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
42820263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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