View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_low_7 (Length: 478)
Name: NF9165_low_7
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 44703764 - 44704206
Alignment:
| Q |
18 |
gcagagatctagagtagtggatccaactccccttcgtgagggacactccaaagattagtaggttaaattaaattaaacaaaacccagagtaatttattct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44703764 |
gcagagatctagagtagtggatccaactccccttcgtgagggacactccaaagattagtaggttaaattaaattaaacaaaacccagagtaatttattct |
44703863 |
T |
|
| Q |
118 |
tctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44703864 |
tctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaaagg |
44703963 |
T |
|
| Q |
218 |
cagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44703964 |
cagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttc |
44704063 |
T |
|
| Q |
318 |
cttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagta |
417 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44704064 |
cttcattccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagta |
44704163 |
T |
|
| Q |
418 |
cgtgctcgtccgatcattgatgatctcttcacgctgaaggtag |
460 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
44704164 |
cgtgctcgtccgatcatagatgacctcttcacactgaaggtag |
44704206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 115 - 458
Target Start/End: Original strand, 44714564 - 44714907
Alignment:
| Q |
115 |
tcttctgtagtagggtgtaccgtaggctccgcagttgcatcatcaccaattgaaccatcaccgttgatttgatcaaggacgagaacgaatcccatagcaa |
214 |
Q |
| |
|
|||||||| ||||| || || | || ||||||||||||||||||| ||| ||| |||||||| |||| |||||||||||||||| |||||||| |||| |
|
|
| T |
44714564 |
tcttctgtggtaggatgcacagaagactccgcagttgcatcatcatcaagggaatcatcaccgctgatatgatcaaggacgagaataaatcccattgcaa |
44714663 |
T |
|
| Q |
215 |
aggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgtt |
314 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||| |||||||| || |||||| || |||||| |||||||||||||| |||| ||||||||| || | |
|
|
| T |
44714664 |
aagcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaat |
44714763 |
T |
|
| Q |
315 |
ttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactcca |
414 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
44714764 |
ttccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactgtcactccc |
44714863 |
T |
|
| Q |
415 |
gtacgtgctcgtccgatcattgatgatctcttcacgctgaaggt |
458 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714864 |
gcacgtggtcgtccgatcattgatgatctcttcacgctgaaggt |
44714907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 409
Target Start/End: Complemental strand, 2278291 - 2278054
Alignment:
| Q |
172 |
tcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataa |
271 |
Q |
| |
|
||||| |||||||||||||| || | ||| |||||||| ||||||| | |||||| |||| | ||||||||| ||||||||||| |||||||||| |
|
|
| T |
2278291 |
tcaccattgatttgatcaagtaccaaaaccaatcccatggcaaaggacacatcaaaatcaggttgaacacaaagcatgaacacttctttcccaagcataa |
2278192 |
T |
|
| Q |
272 |
cacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtg |
371 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||||||| || || ||| | || ||||||| | || || | ||| | ||| || ||||||||| | |
|
|
| T |
2278191 |
cactagtggtggggtccactttacgacgaatctcagccactaatttctttgtggcattaaaaatcttacagcatctttgtgggaaacacccttcaatgag |
2278092 |
T |
|
| Q |
372 |
gtactcctcaccagggttatcgtacacctccactgtta |
409 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
2278091 |
gtactccacacctgggttatcgtgtacctccactgtta |
2278054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University