View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_low_8 (Length: 451)
Name: NF9165_low_8
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 10760678 - 10760255
Alignment:
| Q |
9 |
tggtgttgtcgtgatcgaagagagcttcgtagactagtggttcccaattatggattgacgacttttttattttaatgggaccgttggattttatcataag |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10760678 |
tggtgttgtcgcgatcgaagagagcttcgtagactagtggttcccaattatggattgacgacttttttatttgaatgggaccgttggattttatcataag |
10760579 |
T |
|
| Q |
109 |
tgatatattatcgccacgtggagggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggtttt |
208 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10760578 |
tgatatattctcaccacgtggagggattggacaacgtacaatttgttcgtgaagcctaatcgagtaaagttgaaccggttcttgagtgagacgaggtttt |
10760479 |
T |
|
| Q |
209 |
gagtcatcatctgaagagtaaacacattgaaggtcatgtttggtgtgatagcgaaaagataaagggtagtttaagaacattaaaacatgatcaggaagca |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10760478 |
gagtcatgatctgaagagtaaacacattgaaggtcacgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagca |
10760379 |
T |
|
| Q |
309 |
taactgtttcccgaattgtgatttggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatgga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10760378 |
aaactgtttcccgaattgtgatttggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatgga |
10760279 |
T |
|
| Q |
409 |
tgaaataattagggaggtaaagat |
432 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10760278 |
tgaaataattagggaggtaaagat |
10760255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University