View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_high_12 (Length: 290)
Name: NF9166_high_12
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 7845374 - 7845642
Alignment:
| Q |
17 |
atatacaacatatggaagatcaaaa-acctagtaacaaattcaagggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatc |
115 |
Q |
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| T |
7845374 |
atatacaacatatggaagatcaaaaaacctagtaacaaattcaagggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatc |
7845473 |
T |
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| Q |
116 |
tactatgaaaacaaatccctcttgcatgaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttagaagcataccctgcacttat |
215 |
Q |
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| T |
7845474 |
tactaggaaaacaaatccctcttgcaagaatctttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcataccctgcacttat |
7845573 |
T |
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| Q |
216 |
tatttccaaccaaaatgcaatcaaacaatgtttcaccacaaatgacaaaatcttagcctcaacaccaaa |
284 |
Q |
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| T |
7845574 |
tatttccaaccaaaatgcaatcaaagaatgtttcaccacaaatgacaaaatcttatcctcaagaccaaa |
7845642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 7839393 - 7839660
Alignment:
| Q |
18 |
tatacaacatatggaagatcaaaa-acctagtaacaaattcaagggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatct |
116 |
Q |
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| T |
7839393 |
tatacaacatatggaagatcaaaaaacctagtaacaaattcaagggtatgaaaccaccagaaccattatttgcattaccattaataggtcagctccatct |
7839492 |
T |
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| Q |
117 |
actatgaaaacaaatccctcttgcatgaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttagaagcataccctgcacttatt |
216 |
Q |
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| T |
7839493 |
actaggaaaataaatctctcttgcaagaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcatgccctgcacttatt |
7839592 |
T |
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| Q |
217 |
atttccaaccaaaatgcaatcaaacaatgtttcaccacaaatgacaaaatcttagcctcaacaccaaa |
284 |
Q |
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| T |
7839593 |
atttccaaccaaaatgcaatcaaacaatgtttcaccacaaatgacaaaatcttagcctcaaaaccaaa |
7839660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 7841448 - 7841716
Alignment:
| Q |
17 |
atatacaacatatggaagatcaaaa-acctagtaacaaattcaagggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatc |
115 |
Q |
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| T |
7841448 |
atatacaacatatggaagatcaaaaaacctagtaacaaattcaagggtatgaaaccaccagaaccattatttgcattacctttaataggtcacctccatc |
7841547 |
T |
|
| Q |
116 |
tactatgaaaacaaatccctcttgcatgaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttagaagcataccctgcacttat |
215 |
Q |
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| T |
7841548 |
tactaggaaaacaaatccctcttgcaagaatctttgcttcattttctgacaaatatggtcctgtcttccaaatccgtttaggagcataccctgcacttat |
7841647 |
T |
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| Q |
216 |
tatttccaaccaaaatgcaatcaaacaatgtttcaccacaaatgacaaaatcttagcctcaacaccaaa |
284 |
Q |
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|||||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7841648 |
tatttccaacaaagaagcaatcaaagaatgtttcaccacaaatgacaaaatcttagcctcaagaccaaa |
7841716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 3657164 - 3657431
Alignment:
| Q |
18 |
tatacaacatatggaagatcaaaa-acctagtaacaaattcaagggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatct |
116 |
Q |
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||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
3657164 |
tatacaacatatggagggtaaaaaaacctagtaacaaattcaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatct |
3657263 |
T |
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| Q |
117 |
actatgaaaacaaatccctcttgcatgaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttagaagcataccctgcacttatt |
216 |
Q |
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|||| |||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
3657264 |
actaggaaaccaaatccctcttgcaagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttatt |
3657363 |
T |
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| Q |
217 |
atttccaaccaaaatgcaatcaaacaatgtttcaccacaaatgacaaaatcttagcctcaacaccaaa |
284 |
Q |
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||||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
3657364 |
atttccaacaaagaagcaatcaaagaatgtttcactacaaatgacaaaatcttagcctcaagaccaaa |
3657431 |
T |
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