View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_high_13 (Length: 256)
Name: NF9166_high_13
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_high_13 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 3415 - 3643
Alignment:
| Q |
19 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3415 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
3514 |
T |
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| Q |
119 |
tttaattacgcaaaactgatgagaaatctaactgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
3515 |
tttaattacgcaaaactgatgagaaatctaactgataagaaaccataatatcagttgcttacttcacaattgcggaacattttaatttcctcaattatca |
3614 |
T |
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| Q |
219 |
attcagttcacaaggcaatgcagtataat |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3615 |
attcagttcacaaggcaatgcagtataat |
3643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 23979 - 24207
Alignment:
| Q |
19 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23979 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
24078 |
T |
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| Q |
119 |
tttaattacgcaaaactgatgagaaatctaactgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatca |
218 |
Q |
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| T |
24079 |
tttaattacgcaaaactgatgagaaatctaactgataagaaaccataatatcaattgcttacttcacaattgcggaacattttaatttcctcaattataa |
24178 |
T |
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| Q |
219 |
attcagttcacaaggcaatgcagtataat |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24179 |
attcagttcacaaggcaatgcagtataat |
24207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 41407519 - 41407291
Alignment:
| Q |
19 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41407519 |
gtccatattaccgagataaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatgaatagtgtgttatgc |
41407420 |
T |
|
| Q |
119 |
tttaattacgcaaaactgatgagaaatctaactgataagaaaccataatatcagttgcttacttcacaattgcaggacattttaatttcctcaattatca |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| | |
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| T |
41407419 |
tttaattacgcaaaactaatgagaaatctaactgataagaaaccataatatcaattgcttacttcacaattgcggaacattttaatttcctcaattataa |
41407320 |
T |
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| Q |
219 |
attcagttcacaaggcaatgcagtataat |
247 |
Q |
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| T |
41407319 |
attcagttcacaaggcaatgcagtataat |
41407291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 1041754 - 1041635
Alignment:
| Q |
34 |
ataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
133 |
Q |
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||||| ||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||| ||||| ||||| || ||||||||||| |
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| T |
1041754 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaa |
1041655 |
T |
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| Q |
134 |
ctgatgagaaatctaactga |
153 |
Q |
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|||||||||||||||||||| |
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| T |
1041654 |
ctgatgagaaatctaactga |
1041635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 41192819 - 41192700
Alignment:
| Q |
34 |
ataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
133 |
Q |
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||||| ||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||| ||||| ||||| || ||||||||||| |
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| T |
41192819 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaa |
41192720 |
T |
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| Q |
134 |
ctgatgagaaatctaactga |
153 |
Q |
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| T |
41192719 |
ctgatgagaaatctaactga |
41192700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 41200058 - 41199947
Alignment:
| Q |
42 |
tgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgag |
141 |
Q |
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||||||| ||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| ||||| |
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| T |
41200058 |
tgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaacatatgag |
41199959 |
T |
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| Q |
142 |
aaatctaactga |
153 |
Q |
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|||||||||||| |
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| T |
41199958 |
aaatctaactga |
41199947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 33323345 - 33323226
Alignment:
| Q |
34 |
ataaaatctgtcaactttcatactttttgttttgcagcaagtcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaa |
133 |
Q |
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||||| ||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||| ||||| ||||| || ||||||||||| |
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| T |
33323345 |
ataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaa |
33323246 |
T |
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| Q |
134 |
ctgatgagaaatctaactga |
153 |
Q |
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|||||||||||||||||||| |
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| T |
33323245 |
ctgatgagaaatctaactga |
33323226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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