View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_high_5 (Length: 625)
Name: NF9166_high_5
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 611
Target Start/End: Original strand, 36343893 - 36344486
Alignment:
| Q |
19 |
ggtccaagctctggaagaggctatacagagtctgaagagtcacattgaagtgagtctcctgagtcttaaccattcttcagtgctcaggtgattcgtatcc |
118 |
Q |
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| T |
36343893 |
ggtccaagctctggaagaggctatacagagtctgaagagtcacattgaagtgagtctcctgagtcttaaccattcttcagtgctcaggtgattcgtatcc |
36343992 |
T |
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| Q |
119 |
attaaagcttccacaagttgacaaacaagcatgt-tttggacactgagagctcataactctcaaattgctgaaatgaagacatataaaagacaataatgc |
217 |
Q |
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| T |
36343993 |
attaaagcttccacaagttgacaaacaagcatgtgtttggacactgagagctcataactctcaaattgctgaaatgaagacatataaaagacaataatgc |
36344092 |
T |
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| Q |
218 |
tgccagaaaatagcatggaaactttcaagaccaaaaacaaacaaaatcactaatattcttagcggtcaatgtcacaagcagattgaaacattaacatgtg |
317 |
Q |
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| T |
36344093 |
tgccagaaaatagcatggaaactttcaagaccaaaaacaaacaaaatcactaatattcttagcggtcaatgtcacaagcagattgaaacattaacatgtg |
36344192 |
T |
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| Q |
318 |
acatcaaaaaggacaaacttgggatgataaatcaaaatatattttgtgactattgcaactattgcaatccaagagccccctatccccgctgacaagctta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36344193 |
acatcaaaaaggacaaacttgggatgataaatcaaaatatattttgtgactattgcaactattgcaatccaagagccccctatccccgctgacaagctta |
36344292 |
T |
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| Q |
418 |
gattcctcgcagttacgataacccctctttatttagtcacataatcttattcgtttaatcttaatcggatggctctaaaacataatatttagtcgtttaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36344293 |
gattcctcgcagttacgataacccctctttatttagtcacataatcttagtcgtttaatcttaatcggatggctctaaaacataatatttagtcgtttaa |
36344392 |
T |
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| Q |
518 |
tcttaatcggatgactctaaaacataccatcaaaatgtgaaacatctaaatataaccggattgtccaaattcgcaacagcgtgattcaatgagt |
611 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36344393 |
tcttaataggatgactctaaaacataccattaaaatgtgaaacgtctaaatataaccggattgtccaaattcgcaacagcgtgattgaatgagt |
36344486 |
T |
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