View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_high_9 (Length: 377)
Name: NF9166_high_9
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 12720051 - 12720407
Alignment:
| Q |
1 |
tacgaggttttgtagtagtattattattagcactggttagagttccatttcctcctttggtaatattttgaacaagaacttcacccatactttcaccaat |
100 |
Q |
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| T |
12720051 |
tacgaggttttgtagtagtattattattagcactggttagagttccatttcctcctttggtaatattttgaacaagaacttcacccatactttcaccaat |
12720150 |
T |
|
| Q |
101 |
accttcaacaaacccaccaataaattcaatcacaacttgagaagcaactttagcagcagcagaaagaacacttcctttttcaggaagcctaataccatta |
200 |
Q |
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| T |
12720151 |
accttcaacaaacccaccaataaattcaatcacaacttgagaagcaactttagcagcagcagaaagaacacttggtttttcaggaagcctaataccatta |
12720250 |
T |
|
| Q |
201 |
gcttgaagaccattaactttattcttagcacaaaatgcatgaagattgtagttacacaccgtgcaccgatacactttccccgaccttcgtttcttgcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12720251 |
gcttgaagaccattaactttattcttagcacaaaatgcatgaagattgtagttacacaccgtgcaccgatacactttccccgaccttcgtttcttgcact |
12720350 |
T |
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| Q |
301 |
cgttgcaaacgatcgtgttggaaagatcggtgtttgttgcggccccggtggtggttg |
357 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
12720351 |
cgttgcaaacaatcgtgttggaaagatcggtgtttgttgcagtcccggtggtggttg |
12720407 |
T |
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