View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_1 (Length: 1004)
Name: NF9166_low_1
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 540 - 960
Target Start/End: Original strand, 3110494 - 3110914
Alignment:
| Q |
540 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtccacaaaacagactttgacaaatttgaatgttg |
639 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110494 |
cctgagaattaatgacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtccacaaaacagactttgacaaatttgaatgttg |
3110593 |
T |
|
| Q |
640 |
tgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttcatttctccatta |
739 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110594 |
tgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttcatttctccatta |
3110693 |
T |
|
| Q |
740 |
ttgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttttg |
839 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110694 |
ttgttggacaacactctcttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttttg |
3110793 |
T |
|
| Q |
840 |
atgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgct |
939 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3110794 |
atgaattttgcattttgtaatcatcttcaaatgattcattttctaatactgactttgctggttcaagaaacaataactgtccctttccaggattgatgct |
3110893 |
T |
|
| Q |
940 |
acttagagatatcacaagcat |
960 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3110894 |
acttagagatatcacaagcat |
3110914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 212 - 576
Target Start/End: Original strand, 3110098 - 3110463
Alignment:
| Q |
212 |
gagtaattacaagtgagaagcaattatttatttacttt-caagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110098 |
gagtaattacaagtgagaagcaattatttatttacttcacaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
3110197 |
T |
|
| Q |
311 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110198 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
3110297 |
T |
|
| Q |
411 |
taataggatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctat |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110298 |
taataggatgaagaagaccactcacattatgctccacaatttcctttgtccccccaccatctgttcctagaaccggaagaccaaatgccattgcttctat |
3110397 |
T |
|
| Q |
511 |
cgtcacacgtccaaaggtttctcccaatccctgagagttaatcacataaacatcagcagctgagta |
576 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3110398 |
cgtcacacgtccaaaggtttctcccaatccctgagagttaatgacataaacatcagcagctgagta |
3110463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 218 - 543
Target Start/End: Complemental strand, 26271681 - 26271355
Alignment:
| Q |
218 |
ttacaagtgagaagcaattatttatttactt-tcaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
316 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26271681 |
ttacaagtgagaatcaattatttatttgattctcatgcacctaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
26271582 |
T |
|
| Q |
317 |
ttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaatag |
416 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26271581 |
ttctttcttccatacattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaaggacatgattccctttacgtctaatag |
26271482 |
T |
|
| Q |
417 |
gatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctatcgtcac |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26271481 |
gatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagaccaaatgccattgcttctattgtcac |
26271382 |
T |
|
| Q |
517 |
acgtccaaaggtttctcccaatccctg |
543 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
26271381 |
acgtccaaaggtttctcccaatccctg |
26271355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 758 - 960
Target Start/End: Complemental strand, 26270640 - 26270438
Alignment:
| Q |
758 |
ttgctattgctatccttcatcattggtaacaattttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
857 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26270640 |
ttgctattgctatccttcatcattggcaacaactttctaagatgatgtcttctagccaaagtataaatatcttcaacttttgatgaattttgcattttgt |
26270541 |
T |
|
| Q |
858 |
aatcatcttcaaatgattcattttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaag |
957 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26270540 |
tatcatcttgaaatgattcattttctaatactgactttgctgattcaagaaacaataactgaccctttccaggattgatgctacttagagatatcacaag |
26270441 |
T |
|
| Q |
958 |
cat |
960 |
Q |
| |
|
||| |
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|
| T |
26270440 |
cat |
26270438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 540 - 728
Target Start/End: Complemental strand, 26271280 - 26271092
Alignment:
| Q |
540 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtccacaaaacagactttgacaaatttgaatgttg |
639 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26271280 |
cctgagagttaatgacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtggctggagtccacaaaacagactttgacaaatttgaatgttg |
26271181 |
T |
|
| Q |
640 |
tgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattgtttca |
728 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
26271180 |
tgacaagaaacttacaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcaaaattttcagagactgtttca |
26271092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 880 - 960
Target Start/End: Complemental strand, 44063093 - 44063013
Alignment:
| Q |
880 |
ttctaatactgactttgctgattcaagaaacaataactgtccctttccaggattgatgctacttagagatatcacaagcat |
960 |
Q |
| |
|
||||| |||||| ||||||||||||||| ||||| ||| |||||||| || |||||||||||||||||||| |||||||| |
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|
| T |
44063093 |
ttctactactgagcttgctgattcaagaagcaatagctggccctttccggggttgatgctacttagagatattacaagcat |
44063013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 482 - 543
Target Start/End: Complemental strand, 44064266 - 44064205
Alignment:
| Q |
482 |
accggaagaccaaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctg |
543 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| || ||||| | |||||| |
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|
| T |
44064266 |
accggaagaccaaatgccattgcttctatagtcacccgtccaaatgtctctccaagtccctg |
44064205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 484
Target Start/End: Complemental strand, 44065123 - 44064889
Alignment:
| Q |
253 |
gcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcaccttctttcttccattcattcccatttgttctcttgcc |
352 |
Q |
| |
|
|||| |||||| |||||| |||||||| |||||||||| | ||||||||||||||| | |||||| || || || | || |||||||| | |||||| |
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|
| T |
44065123 |
gcacctaacaataacctcaacaaatttcttatacatgtgttgcttcaaatacatcctctccacctttttcctgccttctatccccatttgcttccttgcc |
44065024 |
T |
|
| Q |
353 |
aatcggttttcaagtaaaaactcaagattttgagcaagaacatgattcc---ctttacgtctaataggatgaagaagaccactcacattatgctccacaa |
449 |
Q |
| |
|
|| |||||| ||||||| || |||||| || ||||| |||| |||| || ||||| ||| |||||||||||||| | ||||| | ||| || | |
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|
| T |
44065023 |
aactggtttttaagtaaatacagaagattctgtgcaaggacatcgttccccgctgcacgtccaattggatgaagaagacctgtaacattgttctcaacta |
44064924 |
T |
|
| Q |
450 |
tttcctttgttcccccaccatctgttcctagaacc |
484 |
Q |
| |
|
| ||||| ||||||||| ||||||||| |||||| |
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| T |
44064923 |
tctccttcgttcccccagaatctgttccgagaacc |
44064889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 540 - 723
Target Start/End: Complemental strand, 44063570 - 44063387
Alignment:
| Q |
540 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtccacaaaacagactttgacaaatttgaatgttg |
639 |
Q |
| |
|
|||||||||| || |||||||||| || || ||||| | ||||||||| |||||||| | ||||||||||||||| || || || |||| ||| || |
|
|
| T |
44063570 |
cctgagagtttatggcataaacatctgctgcagagtataatgaggcaacctgtgttgtggctggagtccacaaaactgatttcgaagtgtttggatgctg |
44063471 |
T |
|
| Q |
640 |
tgacaaaaatcttaaaatacttttaacatattccaccttgttactcttagatccaactgaaccaatcagaattttcagagattg |
723 |
Q |
| |
|
| || || |||| | ||||||||||| |||||||||||||| || |||||||| || ||||| |||| ||| |||||||| |
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|
| T |
44063470 |
ttctaagaaacttaggaggcttttaacataatccaccttgttacttttggatccaacagagccaatgagaactttgagagattg |
44063387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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