View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_14 (Length: 605)
Name: NF9166_low_14
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Complemental strand, 32288505 - 32288054
Alignment:
| Q |
15 |
cacagacagactaactaagcaccattgccagcaccaagnnnnnnnnnn---ctaagcactaaaaatactatagctagctatgacccatgaccttatatat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32288505 |
cacacacagactaactaagcaccattgccagcaccaagaaaagaaaaaaaactaagcactaataatactatagctagctatgacccatgaccttatatat |
32288406 |
T |
|
| Q |
112 |
caatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagcattgccacctgcagcaccaccgccgccgccgcccatatttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
32288405 |
caatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagtattgccacctgcagcaccaccgccgccgccacccatatttg |
32288306 |
T |
|
| Q |
212 |
cttcttgtccaccctgtcctccaccagcatttgcatcgccaaatccaggagcagcagtgccatatacagcagtgtattcataccttgaggtggtggtgcc |
311 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288305 |
cttcttgtccactctgtcctccaccagcatttgcatcgccaaatccaggagcagcagtgccatatacagcagtgtattcataccttgaggtggtggtgcc |
32288206 |
T |
|
| Q |
312 |
atcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgcggctactggttccgtaacaccactttggaatgcatcgctcttctgaata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32288205 |
atcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgcggctactggttccgtaacaccactttggaatgcatcgctcttccgaata |
32288106 |
T |
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| Q |
412 |
tctttttcactatcgcccgttctaggaagattttgaaattgatcgttagggc |
463 |
Q |
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||||||||||||||| ||||||| | |||||||||||||||||||||||||| |
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| T |
32288105 |
tctttttcactatcgtccgttcttgaaagattttgaaattgatcgttagggc |
32288054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 507 - 583
Target Start/End: Complemental strand, 32288025 - 32287949
Alignment:
| Q |
507 |
tgtataaattcggcgagtgtgagataatgcgatgttattatatggatcaattcatattcaaaggaaatgcattatat |
583 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
32288025 |
tgtataaattcggcgagtgtgagatcatgcgatgttattatatggatcaattcatattcaagggaaaggcattatat |
32287949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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