View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_16 (Length: 598)
Name: NF9166_low_16
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 183 - 580
Target Start/End: Complemental strand, 4610032 - 4609635
Alignment:
| Q |
183 |
atagtcagttgaatggtcctcaaagttagtttcataatacttcaagaggaatatgcctcaaagtttgaatagttctcatgaaatttgtgattttgtgcag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4610032 |
atagtcagttgaatggtcctcaaagttagtttcataatacttcaagaggaatatgcctcaaagtttgaatagttctcatgaaatttgtgattttgtgcag |
4609933 |
T |
|
| Q |
283 |
atggtctgccatagcatctaaactacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaagattttggcaggaatagtt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4609932 |
atggtctgccatagcatctaaactacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaagattttgacaggaatagtt |
4609833 |
T |
|
| Q |
383 |
aagctcaaaccaatgactgaaaatgacaatactatcccttcaactccatcactaactcaaagttccaaccctcaaaattcagaaatcaatttccctgctt |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4609832 |
aagctcaaaccaatgactgaaaatgacaatactatcccttcaactccatcactaactcaaagttccaaccctcaaaattcagaaatcaatttccctgctt |
4609733 |
T |
|
| Q |
483 |
cacaaaatcagcattctccaccttcaccattgccaaatatgctagacaataaagttgacaaagttcatgatgctgtagtatcagaaattggtacaagt |
580 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4609732 |
cacaaaatcagcattctccaccttcaccactgccaaatatgctagacaataaagttgacaaaattcatgatgctgtagtatcagaaattggtacaagt |
4609635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 4610212 - 4610076
Alignment:
| Q |
11 |
gaacctgtgatgactgtgatctttcccctaagattaagacccaaaaaatggttatagatgcttgataccaataacatgannnnnnnaaaagtgagaaatt |
110 |
Q |
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| T |
4610212 |
gaacccgtaatgactgtgatctttcccctaagattaagacccaaaaaatggttatagatgcttgataccaataacatgattttttaaaaagtgagaaatt |
4610113 |
T |
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| Q |
111 |
atggattgatgatattctatcatttaattatgcatat |
147 |
Q |
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| T |
4610112 |
atggattgatgatattctatcatttaattatgcatat |
4610076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 14778797 - 14778736
Alignment:
| Q |
303 |
aactacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaag |
364 |
Q |
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|||||||||| ||||||||||||||||| || ||| ||||||||||||| ||||| |||||| |
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| T |
14778797 |
aactacctgggagaacagacaatgatgttaagaacaattggaacacaaagctgaaaaagaag |
14778736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 53557724 - 53557781
Alignment:
| Q |
306 |
tacctggcagaacagacaatgatgtgaaaaactattggaacacaaaactgaagaagaa |
363 |
Q |
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||||||| |||||||||||||| | ||||||||||||||||||| | |||||||||| |
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|
| T |
53557724 |
tacctggaagaacagacaatgacataaaaaactattggaacacaagattgaagaagaa |
53557781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 2790927 - 2790877
Alignment:
| Q |
304 |
actacctggcagaacagacaatgatgtgaaaaactattggaacacaaaact |
354 |
Q |
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||||||||| ||||||||||||||||| || || || |||||||||||||| |
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| T |
2790927 |
actacctggaagaacagacaatgatgtcaagaattactggaacacaaaact |
2790877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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