View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9166_low_2 (Length: 936)

Name: NF9166_low_2
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9166_low_2
NF9166_low_2
[»] chr7 (13 HSPs)
chr7 (89-927)||(7878280-7879118)
chr7 (281-927)||(8589613-8590259)
chr7 (281-778)||(8608892-8609389)
chr7 (416-679)||(8383674-8383937)
chr7 (352-787)||(8544679-8545114)
chr7 (299-666)||(8580690-8581057)
chr7 (428-657)||(8601093-8601322)
chr7 (368-665)||(8575361-8575658)
chr7 (299-665)||(8569304-8569670)
chr7 (438-677)||(29578472-29578711)
chr7 (508-780)||(29582538-29582810)
chr7 (102-157)||(35451129-35451184)
chr7 (110-161)||(37829984-37830035)
[»] chr8 (1 HSPs)
chr8 (475-666)||(12527673-12527864)
[»] chr2 (2 HSPs)
chr2 (110-162)||(41508137-41508189)
chr2 (122-160)||(33658893-33658931)
[»] chr1 (1 HSPs)
chr1 (103-159)||(10280440-10280496)
[»] scaffold0071 (1 HSPs)
scaffold0071 (122-161)||(63449-63488)
[»] chr4 (1 HSPs)
chr4 (109-159)||(38569435-38569485)
[»] chr3 (1 HSPs)
chr3 (121-159)||(32775747-32775785)


Alignment Details
Target: chr7 (Bit Score: 707; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 89 - 927
Target Start/End: Complemental strand, 7879118 - 7878280
Alignment:
Q  89 ccaataaacaaaacaaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtcattcagnnnnnnnnnnnnnnnnnnnnnnnngc 188  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||                        ||    
T  7879118 ccaataaacaaaacaaacccagacgaaggagtaaatattaatctaacaactaattgctaacatttgtcattcagaaaaataaagaaaaagaaaaaaaagc 7879019  T
Q  189 tccacatgaggaatctgaaattcataaacgcaaatgaaataactaatgaagtaactaaaaactgctcaatgggaatcattcagaatcacttctcaaagct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7879018 tccacatgaggaatctgaaattcataaacgcaaatgaaataactaatgaagcaactaaaaactgctcaatggtaatcattcagaatcacttctcaaagct 7878919  T
Q  289 gattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcag 388  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878918 gattcacatgtgctctcaagctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcag 7878819  T
Q  389 aattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcac 488  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878818 aattgatttccaatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcac 7878719  T
Q  489 tgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttca 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878718 tgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttca 7878619  T
Q  589 ttcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctat 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  7878618 ttcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatatcaaaacatacctggattatat 7878519  T
Q  689 gtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaattttgactgt 788  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       
T  7878518 gtccacgaggtgcacgacgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcgtaaacatcaattttgacatc 7878419  T
Q  789 ggattggtcatctgcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgac 888  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878418 ggattggtcatcttcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgac 7878319  T
Q  889 gtgccaagagacaatggagtaacatcttgcaacaccaaa 927  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7878318 gtgccaagagacaatggagtaacatcttgcaacaccaaa 7878280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 281 - 927
Target Start/End: Original strand, 8589613 - 8590259
Alignment:
Q  281 tcaaagctgattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttat 380  Q
    ||||||| || ||| ||||| ||| |||||||||||  ||||  |||||||||   ||||| | |  ||| ||||| ||||| || ||||  ||||||||    
T  8589613 tcaaagcagaatcaaatgtgttcttaagctccctcaagaagtccacaaacacatatgtctcctttggctggttgtcgtcaattaattttttcccctttat 8589712  T
Q  381 aattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaa 480  Q
     |||||||||||||||  |||||| ||||||| ||| ||||| ||||  || || |||||||||||||||||||||||    ||||  ||||| || |||    
T  8589713 cattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaa 8589812  T
Q  481 gcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttc 580  Q
    ||||||| ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |||||||||||||||| ||||  |||||||    
T  8589813 gcattcattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttc 8589912  T
Q  581 cattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctg 680  Q
    |||||||||| || |||||||| | ||| || ||||||||  |||||||||  || || || ||||||||||||||||||||||||  ||| ||||||||    
T  8589913 cattttcattggttattgtaatattttttttattaccactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatacctg 8590012  T
Q  681 gattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 780  Q
    |||   | | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||     
T  8590013 gataggaagcccacgaggtgcacggcgaactttgagattaaacaaaccaagcaagttgttctcaatcgcaaccattctctcaccctcataaacatcaatg 8590112  T
Q  781 ttgactgtggattggtcatctgcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaa 880  Q
    |||||  ||||||| |||||   |  ||||  | ||  | | ||  || |||| |||| |||||||||||||||||||||||||||||||||||| |||     
T  8590113 ttgacactggattgatcatcataacatgtgacgtattcttgctttttccttataggaatagaagtgttcttaggaatcactacatccatgatatcatcat 8590212  T
Q  881 gtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaa 927  Q
     || |||||| |||||||||||||||||||||||||| | |||||||    
T  8590213 atattgacgtaccaagagacaatggagtaacatcttgtagcaccaaa 8590259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 281 - 778
Target Start/End: Original strand, 8608892 - 8609389
Alignment:
Q  281 tcaaagctgattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttat 380  Q
    ||||||| |||||| || |  ||||||||||| |||||||||  ||||||||||  || |||| || ||  ||||||||||| ||||| | ||| |||||    
T  8608892 tcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttat 8608991  T
Q  381 aattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaa 480  Q
     ||||||| |||||  | || ||| |||  ||  || ||| | |||||||| ||  |||||||||||||||||| |||  | |||| |||||| ||||||    
T  8608992 cattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaa 8609091  T
Q  481 gcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttc 580  Q
     |||||| |||| |||| ||||   ||||||||| ||||||    ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |    
T  8609092 acattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgac 8609191  T
Q  581 cattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctg 680  Q
    ||||||| || || || ||||| |||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||| ||    
T  8609192 cattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcagagacatttaatataccatcagcatctatagcaaagcatacttg 8609291  T
Q  681 gattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaa 778  Q
    |||   | |||||||||| ||| |  | |||| ||| ||||| ||||||||||||||||||||||   ||||   |||||||||||| ||||||||||    
T  8609292 gataggaagtccacgaggcgcaagaggtactttgagttcaaataaaccaagcaaattgttctcactagcaacagatctctcaccctcgtaaacatcaa 8609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 416 - 679
Target Start/End: Complemental strand, 8383937 - 8383674
Alignment:
Q  416 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 515  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  516 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtta 615  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| |||| ||| ||     
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattc 8383738  T
Q  616 ccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacct 679  Q
    ||||  || ||||| || || ||||||||||||||||||||| |||||| |  |||||||||||    
T  8383737 ccacaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatacct 8383674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 352 - 787
Target Start/End: Original strand, 8544679 - 8545114
Alignment:
Q  352 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 451  Q
    |||| |||||| ||| ||| ||||||||| |||||||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||    
T  8544679 ttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactt 8544778  T
Q  452 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 551  Q
    ||||||   | ||||  |||| ||||||||||||   ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |    
T  8544779 tcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcat 8544878  T
Q  552 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatata 651  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||  ||||||| ||||||||  |||| ||||| ||||||| |    
T  8544879 tctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaa 8544978  T
Q  652 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 751  Q
    |||| ||||||||||  ||| |||||    |    | | | ||| || ||| |  |||||| ||||| ||| ||||||||||| ||||||||||   |||    
T  8544979 ccattagcatctatagcaaagcatactgtaaaaggaaggcgacggggagcaagaggaactttgagataaaataaaccaagcaagttgttctcactcgcaa 8545078  T
Q  752 ccattctctcaccctcataaacatcaattttgactg 787  Q
      |||||||||||||||||||||| ||||| |||||    
T  8545079 taattctctcaccctcataaacattaatttggactg 8545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 299 - 666
Target Start/End: Original strand, 8580690 - 8581057
Alignment:
Q  299 tgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 398  Q
    |||||||||||||| |||||||||  ||||||||||  |  || |  |  || |||| |||||| ||| ||| ||||||||| ||||||||||| || |     
T  8580690 tgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgcagaattaatctt 8580789  T
Q  399 cactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaacc 498  Q
      |||| || ||||  |||||||||||| |||| | || ||||| |||||||||||||| | | ||||  ||||| ||||||||||| | |||| ||||     
T  8580790 ttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaact 8580889  T
Q  499 ttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattg 598  Q
    |||| | | |||| |||||||| || ||| ||    ||||||| |  |||| || |||||||||| || ||||| |||||||||||||||||||| ||||    
T  8580890 ttcttcttgaactccatgtcttgagccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattg 8580989  T
Q  599 taatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctata 666  Q
    ||||  | |||||  || || |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  8580990 taatagccttcttactagcatttgtttcttcctctgcagagacatttaatataccatcagaatctata 8581057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 428 - 657
Target Start/End: Original strand, 8601093 - 8601322
Alignment:
Q  428 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 527  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  528 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttct 627  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| | | || ||||  || |||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggtatct 8601292  T
Q  628 tcctttgcggagacatttaatataccatca 657  Q
    ||| | ||||| || ||||| |||||||||    
T  8601293 tccgtcgcggatacgtttaaaataccatca 8601322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 368 - 665
Target Start/End: Original strand, 8575361 - 8575658
Alignment:
Q  368 tttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaat 467  Q
    ||||||||||||| ||||| ||||| || | | |||| || ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||     
T  8575361 tttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaag 8575460  T
Q  468 gtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcc 567  Q
     ||||| ||||| ||||| | |||| |||| |||| | | |||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||      
T  8575461 ataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttga 8575560  T
Q  568 cttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 665  Q
     | |||||||| |  | || |||||| |||| |||  ||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  8575561 gtcgatagtctacagtattgattcgtcattgcaatacctttcttataaccacttgtttcttcctttgccgagacatttaatataccatcaacatctat 8575658  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 299 - 665
Target Start/End: Original strand, 8569304 - 8569670
Alignment:
Q  299 tgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 398  Q
    |||||||||||||| |||||||||  ||||||||||  || || | || |||  | ||| |||| ||| ||| ||||||  | ||||| || ||||| |     
T  8569304 tgctctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgctgagttgatctt 8569403  T
Q  399 cactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaacc 498  Q
    | |||| || |||||||||||||||||  ||   ||||| | |||||||||||| || | | | ||||  ||||| |||||||||||   ||||  |||     
T  8569404 ctctttgtctacaggagtgagctttgagctagtactatcgttcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaact 8569503  T
Q  499 ttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattg 598  Q
    ||||   | ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||    
T  8569504 ttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattg 8569603  T
Q  599 taatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 665  Q
    ||||||| || || || ||||| |||||||||  ||| ||||| || || || ||||||||||||||    
T  8569604 taatttcatttttattgccactggtttcttccactgcagagacgttcaaaattccatcagcatctat 8569670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 677
Target Start/End: Complemental strand, 29578711 - 29578472
Alignment:
Q  438 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 537  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  538 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg 637  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  || |    
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 29578512  T
Q  638 agacatttaatataccatcagcatctatattaaaacatac 677  Q
     |||||||||||||||||| ||||| |||  |||||||||    
T  29578511 tgacatttaatataccatctgcatcgatagcaaaacatac 29578472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 508 - 780
Target Start/End: Complemental strand, 29582810 - 29582538
Alignment:
Q  508 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 607  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  608 tcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcg 707  Q
    | || || ||| | ||||||||||  || | |||||||| ||||||||| |||||||||  ||| ||||| | ||| | | | || ||||| |||||  |    
T  29582710 ttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg 29582611  T
Q  708 aacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 780  Q
    || |  ||||  ||||||||| ||||| ||||||||||   |    |||||||||||||||||||||| ||||    
T  29582610 aattaagagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaatt 29582538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 35451184 - 35451129
Alignment:
Q  102 caaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtca 157  Q
    |||||||| ||||| |||| ||||||||||||||||||||||  ||||||||||||    
T  35451184 caaactcaaacgaatgagtaaatattaatctaacaactaattattaacatttgtca 35451129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 37829984 - 37830035
Alignment:
Q  110 gacgaaggagtcaatattaatctaacaactaattgataacatttgtcattca 161  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||||||||    
T  37829984 gacgaaggagtagatattaatctaacaactaattactaacatttgtcattca 37830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 475 - 666
Target Start/End: Original strand, 12527673 - 12527864
Alignment:
Q  475 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 574  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  575 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctata 666  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| |||||| || ||||| ||||||||||| ||||||||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctata 12527864  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 41508189 - 41508137
Alignment:
Q  110 gacgaaggagtcaatattaatctaacaactaattgataacatttgtcattcag 162  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  41508189 gacgaaggagtaaatattaatataacaactaattgctaacatttgtcattcag 41508137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 33658931 - 33658893
Alignment:
Q  122 aatattaatctaacaactaattgataacatttgtcattc 160  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  33658931 aatattaatctaacaactaattaataacatttttcattc 33658893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 10280440 - 10280496
Alignment:
Q  103 aaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtcatt 159  Q
    ||||| |||||||||||| |||||||||||||||||||||| | |||||||| ||||    
T  10280440 aaacttagacgaaggagtaaatattaatctaacaactaattaagaacatttgccatt 10280496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 63449 - 63488
Alignment:
Q  122 aatattaatctaacaactaattgataacatttgtcattca 161  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  63449 aatattaatctaacaactaattaataacatttgtcattca 63488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 38569435 - 38569485
Alignment:
Q  109 agacgaaggagtcaatattaatctaacaactaattgataacatttgtcatt 159  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||| ||||    
T  38569435 agacgaaggagtaaatattaatctaacaactaacttctaacatttggcatt 38569485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 32775747 - 32775785
Alignment:
Q  121 caatattaatctaacaactaattgataacatttgtcatt 159  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  32775747 caatattaatctaacaactaactaataacatttgtcatt 32775785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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