View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_20 (Length: 535)
Name: NF9166_low_20
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 25 - 514
Target Start/End: Original strand, 40518297 - 40518787
Alignment:
| Q |
25 |
ctcatgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcttctattattatgcgactcctctgtttgaacagaggtacttga |
124 |
Q |
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| T |
40518297 |
ctcatgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcttatattattatgcgactcctctgtttgaacagaggtacttga |
40518396 |
T |
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| Q |
125 |
tgacaaactgattcggaaagtcgaaaaggatgtgaagtattccgtaaaaagtgtgtacatgctctgtatggagggtttggtggacatatctcatcttcaa |
224 |
Q |
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| T |
40518397 |
tgacaaactgattcggaaagtcgaaaaggatgtgaagtattccgtaaaaagtgtgtacatgctctgtatggagggtttggtggacatatctcatcttcaa |
40518496 |
T |
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| Q |
225 |
aggccatgcttcttgtccgacattttgcatttaaacatcccttcgaaattaaaaaatttagtttggcaaatgtgtcgtcgttgtttgcccacacgagttt |
324 |
Q |
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| T |
40518497 |
aggccatgcttctggtccgacatttggcatttaaacatccctccgaaattaaaaaatttagtttggcaaatgtgtcgtcgttgtttgcccacacgagttt |
40518596 |
T |
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| Q |
325 |
acttgtaggataaatgtattcaataccctacaaattgcgttagttgtgattcttctgttgatgatttggatcatgtgnnnnnnnactt-gtccttttgca |
423 |
Q |
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| T |
40518597 |
gcttgtaggataaatgtattcaataccctacaaattgcgttagttgtgattcttctgttgatgatttggatcatgtgtttttttacttagttcttttgca |
40518696 |
T |
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| Q |
424 |
atgcaaggttggtttacaattggtttatagaacaacattcaacatattgtcaacaaaaccggtacgacctcataagtaatctttttgtagt |
514 |
Q |
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| T |
40518697 |
atgcaaggttggtttacaattggtttatagaacaacattcaacatattgtcaacaaaaccggtacgacctcataattaatttttttgtagt |
40518787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 41837233 - 41837290
Alignment:
| Q |
180 |
tacatgctctgtatggagggtttggtggacatatctcatcttcaaaggccatgcttct |
237 |
Q |
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| T |
41837233 |
tacatgctttgtatggagggtttggcggacacctctcatcttcaaaggctaggcttct |
41837290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 41837385 - 41837428
Alignment:
| Q |
335 |
taaatgtattcaataccctacaaattgcgttagttgtgattctt |
378 |
Q |
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| T |
41837385 |
taaatgttttcaatgccctacaaattgtgttagttgtgattctt |
41837428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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