View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_21 (Length: 378)
Name: NF9166_low_21
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 33681307 - 33681509
Alignment:
| Q |
20 |
gttgctttcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggt |
119 |
Q |
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| T |
33681307 |
gttgctctcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggt |
33681406 |
T |
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| Q |
120 |
a----aagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagat |
215 |
Q |
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| T |
33681407 |
aaattaagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagat |
33681506 |
T |
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| Q |
216 |
cac |
218 |
Q |
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| T |
33681507 |
cac |
33681509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 33666705 - 33666878
Alignment:
| Q |
20 |
gttgctttcagttccaccttctggtgcattggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggt |
119 |
Q |
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| T |
33666705 |
gttgctttcagttccaccttctggtgcattggttattacatctctggttcacaatattttgcgtagacatccttcgatc-aactgtttggtgcatcgggt |
33666803 |
T |
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| Q |
120 |
aaagatattctattttctatattttgtttttgcaattacttcaatagtaaaatttgtttcctggattactttatc |
194 |
Q |
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| T |
33666804 |
aaagatagtcttgtgtctatattttgtttttgcaatcacttcattagtaaattttgtttcctggattactatatc |
33666878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 33681571 - 33681660
Alignment:
| Q |
215 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
304 |
Q |
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| T |
33681571 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
33681660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 33681703 - 33681768
Alignment:
| Q |
304 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccatattgtatctctgcttctc |
369 |
Q |
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| T |
33681703 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccattttgtatctatgtttctc |
33681768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 33666966 - 33667029
Alignment:
| Q |
221 |
taaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttat |
284 |
Q |
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| T |
33666966 |
taaacttttccatttagaaaatgatctatgctgtgttcaggaaatacttttctattcatcttat |
33667029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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