View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_27 (Length: 349)
Name: NF9166_low_27
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 1796408 - 1796096
Alignment:
| Q |
14 |
attattctcaggattagcaagtagggaaagtccacctcaaaagcactaaattggcctaataaaaagttccaacaatgaatctatatgaggttcacctcca |
113 |
Q |
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| T |
1796408 |
attattttcaggattagcaagtagg-aaagtccacctcaaaagcactaaattggcctaataaaaagttctaacaatgaatctatatgaggttcacctcca |
1796310 |
T |
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| Q |
114 |
acgccatccatataaactaactcacctttaaaataaacactaacatgcatgttccaccgttcctagtatcatgaacacattcagatataattagtgtggt |
213 |
Q |
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| T |
1796309 |
acgccatccatataaactaaatcacctttgaaataaacactaacatg----ttccaccgttcctagtatcatgaacacattcagatataattagtgtggt |
1796214 |
T |
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| Q |
214 |
tgcttatctcgaattctgtttcctatagaaacttgattttattcgatacaaattcaacataaagaatagaaacaataaggagcgtatgacgttggagcca |
313 |
Q |
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| T |
1796213 |
tgcttatctcgaattctgtttccgatagaaacttgattttattcgatacaaattcaacataaagaatagaaacaataaggagcgtatgacgttggagcca |
1796114 |
T |
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| Q |
314 |
catagtaaataagggttt |
331 |
Q |
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|||||||||||||||||| |
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| T |
1796113 |
catagtaaataagggttt |
1796096 |
T |
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