View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_28 (Length: 325)
Name: NF9166_low_28
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 30953348 - 30953041
Alignment:
| Q |
18 |
cttcccccttctccaatagattttgttcattgcatgcttacaagaaaggcgcagataaggactgaacagagaagaataaaactcataaaaatttcattga |
117 |
Q |
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| T |
30953348 |
cttcccccttctccaatagattttgttcattgcatgcttacaagaaaggcgcagataaggactgaacagagaagaataaaactcataaaaatttcattga |
30953249 |
T |
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| Q |
118 |
gacaacaaacaataacaacaacgcataaattctcatactttatttcttgtgtactactttgcttcaatttcagttttgcatcattacgaagatttgaccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30953248 |
gacaacaaacaataacaacaacgcataaattctcatactttatttcttgtgtactactttgcttcaatttcagttttgcatcattacgaaaatttgaccc |
30953149 |
T |
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| Q |
218 |
atagccccaattcttatactgtatgttctctccctctcaatttcaattttgcatcattgagaaattttgacccataaccccaatttctgggtttaacatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30953148 |
atagccccaattcttatactgtatgttctctccctctcaatttcaattttgcatcattgagaaattttgacccataaccccaatttctgggtttaacatt |
30953049 |
T |
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| Q |
318 |
atgtttga |
325 |
Q |
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|||||||| |
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| T |
30953048 |
atgtttga |
30953041 |
T |
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