View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9166_low_31 (Length: 289)

Name: NF9166_low_31
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9166_low_31
NF9166_low_31
[»] chr4 (9 HSPs)
chr4 (1-271)||(31245374-31245644)
chr4 (198-271)||(31019309-31019382)
chr4 (198-271)||(31029190-31029263)
chr4 (16-270)||(31158759-31159013)
chr4 (16-98)||(31029363-31029445)
chr4 (17-98)||(31019482-31019563)
chr4 (198-271)||(31477463-31477536)
chr4 (18-106)||(31150022-31150110)
chr4 (3-98)||(31489969-31490064)
[»] chr6 (6 HSPs)
chr6 (1-271)||(13609425-13609695)
chr6 (3-93)||(31561103-31561193)
chr6 (198-270)||(33389588-33389660)
chr6 (21-97)||(33402306-33402382)
chr6 (21-104)||(33287227-33287310)
chr6 (213-253)||(9168304-9168344)
[»] chr7 (1 HSPs)
chr7 (4-247)||(14724653-14724898)
[»] chr5 (1 HSPs)
chr5 (6-247)||(17598864-17599107)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 31245374 - 31245644
Alignment:
Q  1 gagaatggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcct 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||| ||| |||||||| ||| |||||||||| |||| |    
T  31245374 gagaatggctaggcacagggagtagaatcatcataatttctagagatgttcatatcttgagagagcatggagtagatgaagtgtacaaagttcgactctt 31245473  T
Q  101 ggatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacagctgatgtactaacatat 200  Q
    ||||| |||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||| || ||||||| | ||||||| ||||| ||||||||||    
T  31245474 ggatcataataatgcccttcaattgttttgtaggaaggctttcaagagtgatgatatcatgagcggttacatatacttgacagatgatgcactaacatat 31245573  T
Q  201 gccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggag 271  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||    
T  31245574 gccaatggccttccattagcaattaaagttttgggctcatttttgtatggccgagatgtctctgaatggag 31245644  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 31019382 - 31019309
Alignment:
Q  198 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggag 271  Q
    |||||||||||||| ||| |||||||||||||||||||  ||||||||| |||||||||| |||| ||||||||    
T  31019382 tatgccaatggcctaccactagcaattaaagtattgggctcatttttgtttggtcgagatatctccgaatggag 31019309  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 31029263 - 31029190
Alignment:
Q  198 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggag 271  Q
    |||||||||||||| ||| |||| ||||||||||||||  ||||||||| |||||||||| |||||||||||||    
T  31029263 tatgccaatggcctaccactagctattaaagtattgggctcatttttgtttggtcgagatatctctgaatggag 31029190  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 31159013 - 31158759
Alignment:
Q  16 cagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcctggatcgtaatgatgc 115  Q
    |||||||||||||  | |||||||||||| |||  |||||||||| |||||||| ||| |||| ||| |||||||||| |||| || || | | | |  |    
T  31159013 cagggagtagaatcgttataatttctagagatgaacatatcttgaaagagtatggagttgatgtagtttacaaagttccactcttgaatgggactaactc 31158914  T
Q  116 ccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatga-acgtttacataaatttgacagctgatgtactaacatatgccaatggccttcc 214  Q
     ||||||||||||||| | ||||||||||||  |||| |||| ||||   ||||  || || ||||||  |||  |||| |  ||||| ||||| || ||    
T  31158913 tcttcaattgttttgtcaaaaagctttcaaacttgatcatattatgagtagttttgat-aagttgacatttgacatactcagttatgctaatggtctacc 31158815  T
Q  215 attagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatgga 270  Q
      |||||||||||||||||||  ||||||||| |||||||||  ||| ||||||||    
T  31158814 gctagcaattaaagtattgggatcatttttgtttggtcgagacatctatgaatgga 31158759  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 31029445 - 31029363
Alignment:
Q  16 cagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactc 98  Q
    ||||||||||||| || |||||||||||| ||| |||||||||||  ||||||| ||| |||| ||| |||||||||| ||||    
T  31029445 cagggagtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccactc 31029363  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 31019563 - 31019482
Alignment:
Q  17 agggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactc 98  Q
    |||||||||||| || |||||||||||| ||| |||||||||||  ||||||| ||| |||| ||| |||||||||| ||||    
T  31019563 agggagtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccactc 31019482  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 31477463 - 31477536
Alignment:
Q  198 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggag 271  Q
    |||||||||||||| ||| | |||||||||||||||||  ||||||||| |||||| ||| | |||||||||||    
T  31477463 tatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggag 31477536  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 31150110 - 31150022
Alignment:
Q  18 gggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcctggatcg 106  Q
    ||||||||||| || |||||||||||| | | ||||||||||| |||||||| ||| ||||  || |||||||||| ||||||| ||||    
T  31150110 gggagtagaatcattataatttctagagacgagcatatcttgaaagagtatggagtggatgttgtttacaaagttccactcctgaatcg 31150022  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 31489969 - 31490064
Alignment:
Q  3 gaatggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactc 98  Q
    |||||| ||||  ||||||||||||| || ||||||||| || |||  |||||||||| |||||||| ||| |||| ||| |||| ||||| ||||    
T  31489969 gaatggttaggtgcagggagtagaatcattataatttctggagatgaacatatcttgaaagagtatggagttgatgtagtttacagagttccactc 31490064  T

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Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 13609425 - 13609695
Alignment:
Q  1 gagaatggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcct 100  Q
    ||||||| |||||  ||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||| |||||||| | | ||  |||| | |    |    
T  13609425 gagaatgtctaggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcatt 13609524  T
Q  101 ggatcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacagctgatgtactaacatat 200  Q
     |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||  | |||   | | ||||||  ||||||||||| ||||    
T  13609525 agatcttaatgatgcccttcgattgttttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatat 13609624  T
Q  201 gccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatggag 271  Q
    ||  ||||| ||||| |||||||| |||| |||||  ||||||||||||||||||||||||||||||||||    
T  13609625 gctgatggcattccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggag 13609695  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 31561103 - 31561193
Alignment:
Q  3 gaatggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttc 93  Q
    |||||| ||||  |||||||||||||||| || ||||||||| ||| |||||| |||| |||||||| ||| |||| ||| ||||||||||    
T  31561103 gaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttc 31561193  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 33389660 - 33389588
Alignment:
Q  198 tatgccaatggccttccattagcaattaaagtattggggacatttttgtatggtcgagatgtctctgaatgga 270  Q
    ||||| ||||| |||||| |||||||||||||||||||  ||||||||| ||||||  ||||  |||||||||    
T  33389660 tatgctaatggtcttccactagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatgga 33389588  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 33402382 - 33402306
Alignment:
Q  21 agtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaact 97  Q
    ||||||||||| || ||||||||| |||  ||||| |||| |||||||||||| || | ||| ||||||||||||||    
T  33402382 agtagaattattatcatttctagagatgaacatatattgaaagagtatgaagtggacgtagtttacaaagttcaact 33402306  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 33287310 - 33287227
Alignment:
Q  21 agtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcctggat 104  Q
    ||||||||||| || ||||||||| ||| |||||| |||  |||||||| ||| |||| ||| |||||||||| |||| |||||    
T  33287310 agtagaattattatcatttctagagatgagcatatattggaagagtatggagtggatgtagtctacaaagttccactcttggat 33287227  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 9168344 - 9168304
Alignment:
Q  213 ccattagcaattaaagtattggggacatttttgtatggtcg 253  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  9168344 ccattagcaattaaagtattgggctcatttttgtttggtcg 9168304  T

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Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 14724653 - 14724898
Alignment:
Q  4 aatggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcctgga 103  Q
    |||||||||||||||| |||||||| ||| |||| |||||| || | |||||||| |||||| ||| |||||||| ||| |||||||||| |||| |  |    
T  14724653 aatggctaggcacaggaagtagaatcatcgtaatatctagagatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaa 14724752  T
Q  104 tcgtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacagctgatgtactaacatatgcc 203  Q
    || |||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| | ||||| |||||||||   |||||||    
T  14724753 tcataatgatgcccttcaattgttttgtaggaaagctttaaaaattgacgatgtcatgagcggttacataaactcgacagatgatgtactcgaatatgcc 14724852  T
Q  204 aatggccttcc--attagcaattaaagtattggggacatttttgta 247  Q
    || || ||| |  ||||||||||||||| |||||  ||||||||||    
T  14724853 aaaggtcttgcatattagcaattaaagtgttgggatcatttttgta 14724898  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 17599107 - 17598864
Alignment:
Q  6 tggctaggcacagggagtagaattatcataatttctagaaatgggcatatcttgagagagtatgaagtagatggagtatacaaagttcaactcctggatc 105  Q
    |||||||||||| | |||||||| ||| |||| |||||| || | |||||||| |||||| ||| |||||||| ||| |||||||||| |||| |  |||    
T  17599107 tggctaggcacaagaagtagaatcatcgtaatatctagagatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaatc 17599008  T
Q  106 gtaatgatgcccttcaattgttttgtaagaaagctttcaaaagtgatgatatcatgaacgtttacataaatttgacagctgatgtactaacatatgccaa 205  Q
     |||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| | ||||| |||||||||   |||||||||    
T  17599007 ataatgatgcccttcaattgttttgtaggaaagctttaaaaattgacgatgtcatgagcggttacataaactcgacagatgatgtactcgaatatgccaa 17598908  T
Q  206 tggccttcc--attagcaattaaagtattggggacatttttgta 247  Q
     || ||| |  ||||||||||||||| |||||  ||||||||||    
T  17598907 aggtcttgcatattagcaattaaagtgttgggatcatttttgta 17598864  T

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