View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9166_low_4 (Length: 888)

Name: NF9166_low_4
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9166_low_4
NF9166_low_4
[»] chr7 (13 HSPs)
chr7 (41-879)||(7878280-7879118)
chr7 (233-879)||(8589613-8590259)
chr7 (233-730)||(8608892-8609389)
chr7 (368-631)||(8383674-8383937)
chr7 (304-739)||(8544679-8545114)
chr7 (251-618)||(8580690-8581057)
chr7 (380-609)||(8601093-8601322)
chr7 (320-617)||(8575361-8575658)
chr7 (251-617)||(8569304-8569670)
chr7 (390-629)||(29578472-29578711)
chr7 (460-732)||(29582538-29582810)
chr7 (54-109)||(35451129-35451184)
chr7 (62-113)||(37829984-37830035)
[»] chr8 (1 HSPs)
chr8 (427-618)||(12527673-12527864)
[»] chr2 (2 HSPs)
chr2 (62-114)||(41508137-41508189)
chr2 (74-112)||(33658893-33658931)
[»] chr1 (1 HSPs)
chr1 (55-111)||(10280440-10280496)
[»] scaffold0071 (1 HSPs)
scaffold0071 (74-113)||(63449-63488)
[»] chr4 (1 HSPs)
chr4 (61-111)||(38569435-38569485)
[»] chr3 (1 HSPs)
chr3 (73-111)||(32775747-32775785)


Alignment Details
Target: chr7 (Bit Score: 707; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 41 - 879
Target Start/End: Complemental strand, 7879118 - 7878280
Alignment:
Q  41 ccaataaacaaaacaaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtcattcagnnnnnnnnnnnnnnnnnnnnnnnngc 140  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||                        ||    
T  7879118 ccaataaacaaaacaaacccagacgaaggagtaaatattaatctaacaactaattgctaacatttgtcattcagaaaaataaagaaaaagaaaaaaaagc 7879019  T
Q  141 tccacatgaggaatctgaaattcataaacgcaaatgaaataactaatgaagtaactaaaaactgctcaatgggaatcattcagaatcacttctcaaagct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7879018 tccacatgaggaatctgaaattcataaacgcaaatgaaataactaatgaagcaactaaaaactgctcaatggtaatcattcagaatcacttctcaaagct 7878919  T
Q  241 gattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcag 340  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878918 gattcacatgtgctctcaagctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcag 7878819  T
Q  341 aattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcac 440  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878818 aattgatttccaatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcac 7878719  T
Q  441 tgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878718 tgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttca 7878619  T
Q  541 ttcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctat 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  7878618 ttcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatatcaaaacatacctggattatat 7878519  T
Q  641 gtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaattttgactgt 740  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       
T  7878518 gtccacgaggtgcacgacgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcgtaaacatcaattttgacatc 7878419  T
Q  741 ggattggtcatctgcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgac 840  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878418 ggattggtcatcttcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgac 7878319  T
Q  841 gtgccaagagacaatggagtaacatcttgcaacaccaaa 879  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7878318 gtgccaagagacaatggagtaacatcttgcaacaccaaa 7878280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 233 - 879
Target Start/End: Original strand, 8589613 - 8590259
Alignment:
Q  233 tcaaagctgattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttat 332  Q
    ||||||| || ||| ||||| ||| |||||||||||  ||||  |||||||||   ||||| | |  ||| ||||| ||||| || ||||  ||||||||    
T  8589613 tcaaagcagaatcaaatgtgttcttaagctccctcaagaagtccacaaacacatatgtctcctttggctggttgtcgtcaattaattttttcccctttat 8589712  T
Q  333 aattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaa 432  Q
     |||||||||||||||  |||||| ||||||| ||| ||||| ||||  || || |||||||||||||||||||||||    ||||  ||||| || |||    
T  8589713 cattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaa 8589812  T
Q  433 gcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttc 532  Q
    ||||||| ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |||||||||||||||| ||||  |||||||    
T  8589813 gcattcattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttc 8589912  T
Q  533 cattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctg 632  Q
    |||||||||| || |||||||| | ||| || ||||||||  |||||||||  || || || ||||||||||||||||||||||||  ||| ||||||||    
T  8589913 cattttcattggttattgtaatattttttttattaccactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatacctg 8590012  T
Q  633 gattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 732  Q
    |||   | | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||     
T  8590013 gataggaagcccacgaggtgcacggcgaactttgagattaaacaaaccaagcaagttgttctcaatcgcaaccattctctcaccctcataaacatcaatg 8590112  T
Q  733 ttgactgtggattggtcatctgcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaa 832  Q
    |||||  ||||||| |||||   |  ||||  | ||  | | ||  || |||| |||| |||||||||||||||||||||||||||||||||||| |||     
T  8590113 ttgacactggattgatcatcataacatgtgacgtattcttgctttttccttataggaatagaagtgttcttaggaatcactacatccatgatatcatcat 8590212  T
Q  833 gtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaa 879  Q
     || |||||| |||||||||||||||||||||||||| | |||||||    
T  8590213 atattgacgtaccaagagacaatggagtaacatcttgtagcaccaaa 8590259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 233 - 730
Target Start/End: Original strand, 8608892 - 8609389
Alignment:
Q  233 tcaaagctgattcacatgtgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttat 332  Q
    ||||||| |||||| || |  ||||||||||| |||||||||  ||||||||||  || |||| || ||  ||||||||||| ||||| | ||| |||||    
T  8608892 tcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttat 8608991  T
Q  333 aattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaa 432  Q
     ||||||| |||||  | || ||| |||  ||  || ||| | |||||||| ||  |||||||||||||||||| |||  | |||| |||||| ||||||    
T  8608992 cattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaa 8609091  T
Q  433 gcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttc 532  Q
     |||||| |||| |||| ||||   ||||||||| ||||||    ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |    
T  8609092 acattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgac 8609191  T
Q  533 cattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctg 632  Q
    ||||||| || || || ||||| |||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||| ||    
T  8609192 cattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcagagacatttaatataccatcagcatctatagcaaagcatacttg 8609291  T
Q  633 gattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaa 730  Q
    |||   | |||||||||| ||| |  | |||| ||| ||||| ||||||||||||||||||||||   ||||   |||||||||||| ||||||||||    
T  8609292 gataggaagtccacgaggcgcaagaggtactttgagttcaaataaaccaagcaaattgttctcactagcaacagatctctcaccctcgtaaacatcaa 8609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 368 - 631
Target Start/End: Complemental strand, 8383937 - 8383674
Alignment:
Q  368 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 467  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  468 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtta 567  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| |||| ||| ||     
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattc 8383738  T
Q  568 ccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacct 631  Q
    ||||  || ||||| || || ||||||||||||||||||||| |||||| |  |||||||||||    
T  8383737 ccacaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatacct 8383674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 304 - 739
Target Start/End: Original strand, 8544679 - 8545114
Alignment:
Q  304 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 403  Q
    |||| |||||| ||| ||| ||||||||| |||||||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||    
T  8544679 ttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactt 8544778  T
Q  404 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 503  Q
    ||||||   | ||||  |||| ||||||||||||   ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |    
T  8544779 tcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcat 8544878  T
Q  504 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatata 603  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||  ||||||| ||||||||  |||| ||||| ||||||| |    
T  8544879 tctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaa 8544978  T
Q  604 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 703  Q
    |||| ||||||||||  ||| |||||    |    | | | ||| || ||| |  |||||| ||||| ||| ||||||||||| ||||||||||   |||    
T  8544979 ccattagcatctatagcaaagcatactgtaaaaggaaggcgacggggagcaagaggaactttgagataaaataaaccaagcaagttgttctcactcgcaa 8545078  T
Q  704 ccattctctcaccctcataaacatcaattttgactg 739  Q
      |||||||||||||||||||||| ||||| |||||    
T  8545079 taattctctcaccctcataaacattaatttggactg 8545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 251 - 618
Target Start/End: Original strand, 8580690 - 8581057
Alignment:
Q  251 tgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 350  Q
    |||||||||||||| |||||||||  ||||||||||  |  || |  |  || |||| |||||| ||| ||| ||||||||| ||||||||||| || |     
T  8580690 tgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgcagaattaatctt 8580789  T
Q  351 cactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaacc 450  Q
      |||| || ||||  |||||||||||| |||| | || ||||| |||||||||||||| | | ||||  ||||| ||||||||||| | |||| ||||     
T  8580790 ttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaact 8580889  T
Q  451 ttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattg 550  Q
    |||| | | |||| |||||||| || ||| ||    ||||||| |  |||| || |||||||||| || ||||| |||||||||||||||||||| ||||    
T  8580890 ttcttcttgaactccatgtcttgagccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattg 8580989  T
Q  551 taatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctata 618  Q
    ||||  | |||||  || || |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  8580990 taatagccttcttactagcatttgtttcttcctctgcagagacatttaatataccatcagaatctata 8581057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 380 - 609
Target Start/End: Original strand, 8601093 - 8601322
Alignment:
Q  380 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 479  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  480 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttct 579  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| | | || ||||  || |||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggtatct 8601292  T
Q  580 tcctttgcggagacatttaatataccatca 609  Q
    ||| | ||||| || ||||| |||||||||    
T  8601293 tccgtcgcggatacgtttaaaataccatca 8601322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 320 - 617
Target Start/End: Original strand, 8575361 - 8575658
Alignment:
Q  320 tttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaat 419  Q
    ||||||||||||| ||||| ||||| || | | |||| || ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||     
T  8575361 tttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaag 8575460  T
Q  420 gtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcc 519  Q
     ||||| ||||| ||||| | |||| |||| |||| | | |||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||      
T  8575461 ataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttga 8575560  T
Q  520 cttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 617  Q
     | |||||||| |  | || |||||| |||| |||  ||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  8575561 gtcgatagtctacagtattgattcgtcattgcaatacctttcttataaccacttgtttcttcctttgccgagacatttaatataccatcaacatctat 8575658  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 251 - 617
Target Start/End: Original strand, 8569304 - 8569670
Alignment:
Q  251 tgctctcaagctccctcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 350  Q
    |||||||||||||| |||||||||  ||||||||||  || || | || |||  | ||| |||| ||| ||| ||||||  | ||||| || ||||| |     
T  8569304 tgctctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgctgagttgatctt 8569403  T
Q  351 cactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaacc 450  Q
    | |||| || |||||||||||||||||  ||   ||||| | |||||||||||| || | | | ||||  ||||| |||||||||||   ||||  |||     
T  8569404 ctctttgtctacaggagtgagctttgagctagtactatcgttcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaact 8569503  T
Q  451 ttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattg 550  Q
    ||||   | ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||    
T  8569504 ttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattg 8569603  T
Q  551 taatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 617  Q
    ||||||| || || || ||||| |||||||||  ||| ||||| || || || ||||||||||||||    
T  8569604 taatttcatttttattgccactggtttcttccactgcagagacgttcaaaattccatcagcatctat 8569670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 629
Target Start/End: Complemental strand, 29578711 - 29578472
Alignment:
Q  390 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 489  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  490 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg 589  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  || |    
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 29578512  T
Q  590 agacatttaatataccatcagcatctatattaaaacatac 629  Q
     |||||||||||||||||| ||||| |||  |||||||||    
T  29578511 tgacatttaatataccatctgcatcgatagcaaaacatac 29578472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 460 - 732
Target Start/End: Complemental strand, 29582810 - 29582538
Alignment:
Q  460 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 559  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  560 tcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcg 659  Q
    | || || ||| | ||||||||||  || | |||||||| ||||||||| |||||||||  ||| ||||| | ||| | | | || ||||| |||||  |    
T  29582710 ttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg 29582611  T
Q  660 aacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 732  Q
    || |  ||||  ||||||||| ||||| ||||||||||   |    |||||||||||||||||||||| ||||    
T  29582610 aattaagagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaatt 29582538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 35451184 - 35451129
Alignment:
Q  54 caaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtca 109  Q
    |||||||| ||||| |||| ||||||||||||||||||||||  ||||||||||||    
T  35451184 caaactcaaacgaatgagtaaatattaatctaacaactaattattaacatttgtca 35451129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 37829984 - 37830035
Alignment:
Q  62 gacgaaggagtcaatattaatctaacaactaattgataacatttgtcattca 113  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||||||||    
T  37829984 gacgaaggagtagatattaatctaacaactaattactaacatttgtcattca 37830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 427 - 618
Target Start/End: Original strand, 12527673 - 12527864
Alignment:
Q  427 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 526  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  527 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctata 618  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| |||||| || ||||| ||||||||||| ||||||||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctata 12527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 41508189 - 41508137
Alignment:
Q  62 gacgaaggagtcaatattaatctaacaactaattgataacatttgtcattcag 114  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  41508189 gacgaaggagtaaatattaatataacaactaattgctaacatttgtcattcag 41508137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 33658931 - 33658893
Alignment:
Q  74 aatattaatctaacaactaattgataacatttgtcattc 112  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  33658931 aatattaatctaacaactaattaataacatttttcattc 33658893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 10280440 - 10280496
Alignment:
Q  55 aaactcagacgaaggagtcaatattaatctaacaactaattgataacatttgtcatt 111  Q
    ||||| |||||||||||| |||||||||||||||||||||| | |||||||| ||||    
T  10280440 aaacttagacgaaggagtaaatattaatctaacaactaattaagaacatttgccatt 10280496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 63449 - 63488
Alignment:
Q  74 aatattaatctaacaactaattgataacatttgtcattca 113  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  63449 aatattaatctaacaactaattaataacatttgtcattca 63488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 38569435 - 38569485
Alignment:
Q  61 agacgaaggagtcaatattaatctaacaactaattgataacatttgtcatt 111  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||| ||||    
T  38569435 agacgaaggagtaaatattaatctaacaactaacttctaacatttggcatt 38569485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 32775747 - 32775785
Alignment:
Q  73 caatattaatctaacaactaattgataacatttgtcatt 111  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  32775747 caatattaatctaacaactaactaataacatttgtcatt 32775785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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