View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9166_low_6 (Length: 787)
Name: NF9166_low_6
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 1 - 773
Target Start/End: Original strand, 6503974 - 6504736
Alignment:
| Q |
1 |
ttcatcgtcaacaactacagcctccgatcgccggagatccgaatacgatcctctgcttctcaaccggttaaacgaagacagactagaattctcataccaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6503974 |
ttcatcgtcaacaactaccgcctccgatcgccggagatccgaatacgatcctctgcttctcaaccggttaaacgaagacagactagaattctcataccaa |
6504073 |
T |
|
| Q |
101 |
aacggcggtgtttcactttcggttactggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504074 |
aacggcggtgtttcactttcggttactggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaa |
6504173 |
T |
|
| Q |
201 |
atctcggataccgataacgaaaatttacacgagtatcatcataaaaccggtaccgataatctccgccatcagcaaccaccacctccggtcgccggagatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6504174 |
atctcggataccgataacgaaaatttacacgagtatcatcataaaaccggtaccgatcatcgccgccgtcagcaaccaccacctccggtcgacggagatc |
6504273 |
T |
|
| Q |
301 |
gggatacgatccaccgcttctcaacctattaaacaccgatggattttcattaccataccaaaacggcggcgtttcagtgtcaggattcgaaaagcttcta |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504274 |
cggatacgatccaccgcttctcaaccgattaaacaccgatggattttcattaccataccaaaacggcggcgtttcagtgtcaggattcgaaaagcttcta |
6504373 |
T |
|
| Q |
401 |
cgatgagtattataactatcaaaacgacgcggtgtcgtttgcgtttcattagtgtcgtttttagtaagaaaaccacaaacgacagcgaagagaactagta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6504374 |
cgatgagtattataactatcaaaacgacgcggtgtcgtttgcgtttcattggtgtcgtttttagtaagaaaaccgcaaacgacagcgaagagaactagta |
6504473 |
T |
|
| Q |
501 |
taaggtttaagtaatcccaagagtgtttaacatcttgtggtttgaatttgaagatgtttgaaatgaaagagtatatagtggggaccacaatgagtatgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504474 |
taaggtttaagtaatcccaagagtgtttaacatcttgtggtttgaatttgaagatgtttgaaatgaaagagtatatagtggggaccacaatgagtatgaa |
6504573 |
T |
|
| Q |
601 |
gattaggattgttatgaggatgaggaagagggtggtggttgttgtgaggaggagtgagtatgtgcggcggagacggtggtggtttgtggtggtttttggg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504574 |
gattaggattgttatgaggatgaggaagagggtggtggttgttgtgaggaggagtgagtatgtgcggcggagacggtggtggtttgtggtggtttttggg |
6504673 |
T |
|
| Q |
701 |
agccaaaatggtgacattggtgatatgtcttcttcttgttccattggaatctaataaatgtactatgatgttt |
773 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6504674 |
agccaaaa---------tggtgatatgtcttcttcttgttccattggaatctaat-aatgtactatgatgttt |
6504736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 6503843 - 6504038
Alignment:
| Q |
125 |
actggtttcacctccggttgccggaaagtttcaccggaagtaaccgtctcccggtgaaattcatcttcatcttgaaatctcggataccgataacgaaaat |
224 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||||| | ||||||||||||||||||||| || ||||| | | ||||||| | || | |
|
|
| T |
6503843 |
actggtttcacctccggtcgccgggaaacttcaccggaagtaaccttttcccggtgaaattcatcttcactttccaatctagagttccgataagggaagt |
6503942 |
T |
|
| Q |
225 |
ttacacgagtatcatcataaaaccggtaccgataatctccgccatcagcaaccaccacctccggtcgccggagatcgggatacgatccaccgcttctcaa |
324 |
Q |
| |
|
| | ||||||||||||||||||||||||| | || | ||| |||| ||| |||||| |||||||||||| | ||||||||| | ||||||||| |
|
|
| T |
6503943 |
gaatatgagtatcatcataaaaccggtaccgttcat------cgtcaacaactaccgcctccgatcgccggagatccgaatacgatcctctgcttctcaa |
6504036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University