View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9166_low_8 (Length: 686)
Name: NF9166_low_8
Description: NF9166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9166_low_8 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Original strand, 19766 - 20438
Alignment:
| Q |
1 |
tccccttccacaggtaatccaaactatagggattcccttgcattcgttttgggaaaaaagttgcataatggttcaggtgtaggccatccccctgggtttg |
100 |
Q |
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| T |
19766 |
tccccttccacaggtaatccaaactatagggattcccttgcattcgttttgggaaaaaagttgcataatggttcaggtgtaggccatccccctgggtttg |
19865 |
T |
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| Q |
101 |
aaaatgtagctgtctctagaaatcgccaactacaaactgagaggtccaattatgattctagctcccctggagctgcagctaatacagtcagttcagttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19866 |
aaaatgtagctgtctctagaaatcgccaactacaaactgagaggtccaattatgattctagctcccctggagctgcagctaatacagtcagttcagttaa |
19965 |
T |
|
| Q |
201 |
cactaagaaataccacagcttgccggacatttcaggatactccattccccacagagctggctatgtgtctgataagaatgcaccgtgggatggttctgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19966 |
cactaagaaataccacagcttgccggacatttcaggatactccattccccacagagctggctatgtgtctgataagaatgcaccgtgggatggttctgtt |
20065 |
T |
|
| Q |
301 |
ggatatggttcttttgctggcaggatgggttatgaaccatctatgtattcaaattctggatcaagagctggaggagctcatttggcctttgatgaagtct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20066 |
ggatatggttcttttgctggcaggatgggttatgaaccatctatgtattcaaattctggatcaagagctggaggagctcatttggcctttgatgaagtct |
20165 |
T |
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| Q |
401 |
ctccatacagagaggcactctcttcgcagtttagttctggttttgacactggatccctctggtctagacagccttttgagcagtttggcgttgctggtaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20166 |
ctccatacagagaggcactctcttcgcagtttagttctggttttgacactggatccctctggtctagacagccttttgagcagtttggtgttgctggtaa |
20265 |
T |
|
| Q |
501 |
aattcataatgttgcaatggaaggtgcgggaagcaggcctaatgcaattgttcaagaaattacatttgaggatatagaggggaaacttcttcagtctgtt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20266 |
aattcataatgttgcaatggaaggtgcgggaagcaggcctaatgcaattgttcaagaaattacatttgaggatatagaggggaaacttcttcagtctgtt |
20365 |
T |
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| Q |
601 |
agacttaccattatgaagctcttaaaactagagggatctgattggttgtttaaacagaatgatggaattgatg |
673 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20366 |
agacttaccattatgaagctcttaaaactagagggatctgattggttgtttaaacagaatgatggaattgatg |
20438 |
T |
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