View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9167_high_4 (Length: 241)
Name: NF9167_high_4
Description: NF9167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9167_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27988924 - 27988702
Alignment:
| Q |
1 |
attatagatatataaaaatggtatttaaaattgcaaaatgttaatcaagtttgttcgtatgtctagattttctaccaaatatatccttgaaattattcat |
100 |
Q |
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| T |
27988924 |
attatagatatataaaaatggtatttaaaattgcaaaatattaatcaagtttgttcggatgtttagattttctaccaaatatatccttgaaattattcat |
27988825 |
T |
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| Q |
101 |
ttagtttccaatttatctctgaaatgacccaacttaatgttactcttgtcctagaaactgaatgcatgcaatttgacatgtgtttcgatagaggtagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
27988824 |
ttagtttccaatttatctctgaaatgacccaacttaatgttactcttgtcctagaaactgaatgcatgcaatttgataggtgtttcgatagaggtagctt |
27988725 |
T |
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| Q |
201 |
gtctataaacttgagatacaaag |
223 |
Q |
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|||||||||||| |||||||||| |
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| T |
27988724 |
gtctataaactttagatacaaag |
27988702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 27986502 - 27986567
Alignment:
| Q |
158 |
ctgaatgcatgcaatttgacatgtgtttcgatagaggtagcttgtctataaacttgagatacaaag |
223 |
Q |
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| T |
27986502 |
ctgaatgcatgcaatctgacatgtgtttcgatagaggtagcttgtctataaactcgagatacaaag |
27986567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 26459215 - 26459287
Alignment:
| Q |
151 |
ctagaaactgaatgcatgcaatttgacatgtgtttcgatagaggtagcttgtctataaacttgagatacaaag |
223 |
Q |
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| T |
26459215 |
ctagaaactgaatgcatgcaatttaacatgggtttcgatagaggtagcttgtctgtaaatttgaaatacaaag |
26459287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 27995931 - 27996004
Alignment:
| Q |
155 |
aaactgaatgcatgcaatttgacatgtgtttc-gatagagg----tagcttgtctataaacttgagatacaaag |
223 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
27995931 |
aaactgaatgcatgcaatttgacatgtgtttcaaatagaggtagctagcttgtctataaacttgagatacaaag |
27996004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 29678002 - 29678074
Alignment:
| Q |
151 |
ctagaaactgaatgcatgcaatttgacatgtgtttcgatagaggtagcttgtctataaacttgagatacaaag |
223 |
Q |
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| T |
29678002 |
ctagaaagtgaatgcatggaatttgacatgtgtttcgatagaggtagcttgtctgtaaacttgagatacaaag |
29678074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 11491404 - 11491337
Alignment:
| Q |
153 |
agaaactgaatgcatgcaatttgacatgtgtttcgatagaggtagcttgtctataaacttgagataca |
220 |
Q |
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| T |
11491404 |
agaaattggatgcatgcaatttgacatgtgtttcgacagaggtagtttggctgtaaacttgagataca |
11491337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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