View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9167_low_4 (Length: 311)

Name: NF9167_low_4
Description: NF9167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9167_low_4
NF9167_low_4
[»] chr3 (3 HSPs)
chr3 (45-186)||(28538122-28538263)
chr3 (31-69)||(4638172-4638210)
chr3 (37-89)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (37-102)||(7616945-7617010)
chr5 (20-86)||(35638066-35638132)
chr5 (12-87)||(39728387-39728462)
chr5 (12-120)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (12-88)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (35-84)||(11142629-11142678)
chr6 (35-86)||(8888908-8888959)
chr6 (31-100)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (37-124)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (31-74)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (36-89)||(18091427-18091480)
chr8 (37-89)||(583840-583892)
chr8 (45-89)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (31-120)||(26805314-26805403)
chr2 (21-89)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (37-89)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 28538263 - 28538122
Alignment:
Q  45 ttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaagtcaacnnnnnnnnnnnnnctataa 144  Q
    ||||| |||||||||  |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||  ||              ||||||    
T  28538263 ttgactagtgtgcatgtctctacgcatgagtcgaattagtcgcccgttattagtggattgaaaaccggtgcaaaagaaaagaaaaaaaaaaaaactataa 28538164  T
Q  145 actaacggcacaaaaataaactccgtcaccgttaacccccca 186  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  28538163 actaacggcacaaaaaaaaactccgtcaccgttaacccccca 28538122  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 4638172 - 4638210
Alignment:
Q  31 aggagaaacaacgtttgaccagtgtgcatacctctacgc 69  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  4638172 aggagaaacaacgcttgaccagtgcgcatacctctacgc 4638210  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 7648764 - 7648816
Alignment:
Q  37 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    |||||||||||||||||| ||||||||||||||  ||| |  |||||||||||    
T  7648764 aacaacgtttgaccagtgcgcatacctctacgcacgagccggattagtcgccc 7648816  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 7616945 - 7617010
Alignment:
Q  37 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggat 102  Q
    ||||||||||||||||| ||||| ||||||||| ||||||| |||||||| || ||||| ||||||    
T  7616945 aacaacgtttgaccagtatgcatgcctctacgcatgagtcagattagtcgtccattattggtggat 7617010  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 35638132 - 35638066
Alignment:
Q  20 attcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcg 86  Q
    |||||||| | ||||| |||||||||||  ||||||||||||||||||||  |||||| ||||||||    
T  35638132 attcgattttcaggaggaacaacgtttggtcagtgtgcatacctctacgcacgagtcagattagtcg 35638066  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 39728387 - 39728462
Alignment:
Q  12 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgc 87  Q
    ||||| || ||||||||| ||  ||||||||  ||| ||||||||||| |||||||||| ||||| ||||||||||    
T  39728387 aataccaggttcgattatcagaggaaacaacacttggccagtgtgcatgcctctacgctcgagtcgaattagtcgc 39728462  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 21149734 - 21149842
Alignment:
Q  12 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccg 111  Q
    ||||| || ||||||| | ||| | |||||||||||||||||| ||||  ||||||||  ||||   |||||||||||   ||| |||||| ||||||||    
T  21149734 aataccaggttcgattttcagggggaacaacgtttgaccagtgcgcatgactctacgcacgagttggattagtcgcccaccattggtggatagaaaaccg 21149833  T
Q  112 atgcaaaag 120  Q
    |||| ||||    
T  21149834 atgcgaaag 21149842  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 58140 - 58064
Alignment:
Q  12 aatactagattcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcc 88  Q
    ||||||||||| ||||   || ||||||||||||||||||||||| |||||||||||| |||||   ||||||||||    
T  58140 aatactagatttgattcctagaagaaacaacgtttgaccagtgtgtatacctctacgcatgagttggattagtcgcc 58064  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 11142629 - 11142678
Alignment:
Q  35 gaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagt 84  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  11142629 gaaacaacgtttgaccagtgcgcatgcctctacgcatgagtcagattagt 11142678  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 8888908 - 8888959
Alignment:
Q  35 gaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcg 86  Q
    ||||||||||||| |||||| |||||||||||||| ||||||  ||||||||    
T  8888908 gaaacaacgtttggccagtgcgcatacctctacgcatgagtcggattagtcg 8888959  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 14107446 - 14107377
Alignment:
Q  31 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtgg 100  Q
    ||||| ||||||| ||||||||||  ||| ||||||||| |||| |  ||||||||||| ||||||||||    
T  14107446 aggaggaacaacgcttgaccagtgcacatgcctctacgcatgagccggattagtcgcccattattagtgg 14107377  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 37369124 - 37369037
Alignment:
Q  37 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaagtcaa 124  Q
    ||||||||||| ||||||||||| |||||||||  |||||  || ||||||||  |||| ||| || | |||||||||| ||||||||    
T  37369124 aacaacgtttgtccagtgtgcatgcctctacgcacgagtcggataagtcgcccactattggtgaatcggaaaccgatgcgaaagtcaa 37369037  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 10507717 - 10507760
Alignment:
Q  31 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgag 74  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  10507717 aggaggaacaacgtttggccagtgtgcatacctctacgcatgag 10507760  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 18091427 - 18091480
Alignment:
Q  36 aaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    ||||||||||||||||||| |||| |||||||||  ||| | ||||||||||||    
T  18091427 aaacaacgtttgaccagtgcgcatgcctctacgcacgaggcgaattagtcgccc 18091480  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 583840 - 583892
Alignment:
Q  37 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||||    
T  583840 aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccc 583892  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 33401873 - 33401829
Alignment:
Q  45 ttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||    
T  33401873 ttgaccagtgtgcatgcctctacgcatgagtcggattagtcgccc 33401829  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 26805314 - 26805403
Alignment:
Q  31 aggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgcccgttattagtggattgaaaaccgatgcaaaag 120  Q
    ||||||||| ||||||| ||||||  ||| ||||||||| ||||||  |||||||||||    || |||| | |||||||||||||||||    
T  26805314 aggagaaacgacgtttggccagtgcacatgcctctacgcatgagtcggattagtcgcccacctttggtggctcgaaaaccgatgcaaaag 26805403  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 41187717 - 41187785
Alignment:
Q  21 ttcgattataaggagaaacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    ||||||||| ||| | ||||||  ||||||||||| ||| ||||||||| |||| || |||||||||||    
T  41187717 ttcgattatgagggggaacaacacttgaccagtgtccatgcctctacgcatgagacatattagtcgccc 41187785  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 12600 - 12652
Alignment:
Q  37 aacaacgtttgaccagtgtgcatacctctacgcttgagtcaaattagtcgccc 89  Q
    ||||||| |||||||||| |||| ||||||||| ||||||  |||||||||||    
T  12600 aacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgccc 12652  T

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