View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9167_low_5 (Length: 252)
Name: NF9167_low_5
Description: NF9167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9167_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27988976 - 27989221
Alignment:
| Q |
1 |
tttaatcatttaaattgaatagttatcgaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27988976 |
tttaatcatttaaattgaatagttatcgaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttc |
27989075 |
T |
|
| Q |
101 |
tttccaatacatggagaccacctagaatcaatttcatcctctat--tgtaattcaaattggttctaatctcagaaattcaataaagtaaaatttatgctg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27989076 |
tttccaatacatggagaccacctagaatcaatttcatcctctattgtgtaattcaaattggttctaatctcacaaattcaataaagtaaaatttatgctg |
27989175 |
T |
|
| Q |
199 |
taaattacaaagattttaataactaagcagaaaagtaagaataatc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27989176 |
taaattacaaagattttaataactaagcagaaaagtaaggataatc |
27989221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10505678 - 10505512
Alignment:
| Q |
1 |
tttaatcatttaaattgaatagttatcgaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatccttc |
100 |
Q |
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|||| ||||||||||| |||| ||||| ||||| | |||||||||||||||| ||||||||||||| || ||||||| | || || | | ||||||||| |
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| T |
10505678 |
tttactcatttaaattaaatatttatcaaattagtttaaacttgagatcatccatattcaccttttgcattccttccatttcatgttttgtagatccttc |
10505579 |
T |
|
| Q |
101 |
tttccaatacatggagaccacctagaatcaatttcatcctctattgtaattcaaattggttctaatc |
167 |
Q |
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|||||||| |||||||| |||| ||| |||| |||| | ||| |||||| |||| |||| ||||| |
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| T |
10505578 |
tttccaatgcatggagattacctgaaattaattgcatcatttatagtaattgaaataggttttaatc |
10505512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 24404333 - 24404165
Alignment:
| Q |
1 |
tttaatcatttaaattgaatagtt--atcgaattattctaaacttgagatcatcgatattcaccttttctatgccttccaatccaagtctcgaagatcct |
98 |
Q |
| |
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|||||||||||||||| | || || ||| ||||| |||||| ||||||||||| || |||||||||| |||||||||||||||| | |||||| || |
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| T |
24404333 |
tttaatcatttaaattaagtatttttatcaaattagtctaaatttgagatcatccctactcaccttttccatgccttccaatccaacttgtgaagattct |
24404234 |
T |
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| Q |
99 |
tctttccaatacatggagaccacctagaatcaatttcatcctctattgtaattcaaattggttctaatc |
167 |
Q |
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||||| ||||||| |||||| | || ||| |||| |||||| ||| ||||||||| ||||| ||||| |
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| T |
24404233 |
tctttgcaatacagggagactatctgaaattaattgcatcctttatagtaattcaatctggttttaatc |
24404165 |
T |
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