View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_10 (Length: 427)
Name: NF9168_low_10
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 24021791 - 24022188
Alignment:
| Q |
12 |
gagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataaccttccaatggacaattacttgaattctacat |
111 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24021791 |
gagtttggaattcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataaccttccaatggacaattacttgaattctacat |
24021890 |
T |
|
| Q |
112 |
tgttgatgccattgtatctctctaagaatggatataccctgatattggattattatggagatgatgaagcagttatctatgatcaaagagaaaatagagc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24021891 |
tgttgatgccattgtatctctctaagaatggatataccctgatattggattattatggagatgatgaagcagttatctatgatcaaagagaaaatagagc |
24021990 |
T |
|
| Q |
212 |
agagagaattagaacttcttacaatctatgtcggttcttataagttgaaagtttggtgtcaacttcgactcattggaagtaagttctttcctaatatttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24021991 |
agagagaattagaacttcttacaatctatgtcggttcttatacgttgaaagtttggtgtcaacttcgactcattggaagtaagttctttcctaatatctt |
24022090 |
T |
|
| Q |
312 |
ttattgtttgaatatgtggtaattcatgcatgtggttttacagtctttgtcatgttataataacatagatgaatgattgtctattggtcattgttaat |
409 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24022091 |
ttgttgtttgaatatgtggtaattcatgcatgtggttttacagtctttgtcatgttataataacatagatgaatgattgtctattggtcattgttaat |
24022188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 24031278 - 24031424
Alignment:
| Q |
12 |
gagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataaccttccaatggacaattacttgaattctacat |
111 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||| | ||| |
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| T |
24031278 |
gagtttggagttcaagagtcttggactcaactatttagaattggctactttaatcttgaaatgcataaccttccaatggatgattatttgaataccacac |
24031377 |
T |
|
| Q |
112 |
tgttgatgccattgtatctctctaagaatggatataccctgatattg |
158 |
Q |
| |
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||||||||||||||| ||| |||| ||||| | ||||| |||||||| |
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|
| T |
24031378 |
tgttgatgccattgtctctgtctaggaatgaagataccttgatattg |
24031424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 24031471 - 24031606
Alignment:
| Q |
160 |
attattatggagatgatgaagcagttatctatgatcaaagagaaaatagagcagagagaattagaacttcttacaatctatgtcggttcttataagttga |
259 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||| | |||||||||||| |||||||||| ||| | |||||| ||||||||||| || ||||| |
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| T |
24031471 |
attattatggagataacgaagcaattatctatgatcataaagaaaatagagctcagagaattagcactgatgacaatccatgtcggttctcttatgttga |
24031570 |
T |
|
| Q |
260 |
aagtttggtgtcaacttcgactcattggaagtaagt |
295 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||| |
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|
| T |
24031571 |
aagtttggtttcaacttcaaggcattggaagtaagt |
24031606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 109 - 409
Target Start/End: Complemental strand, 23847136 - 23846837
Alignment:
| Q |
109 |
cattgttgatgccattgtatctctctaagaatggatataccctgatattggattattatggagatgatgaagcagttatctatgatcaaagagaaaatag |
208 |
Q |
| |
|
|||||||| |||||||||| || |||| |||||| |||| ||||||||| || ||||| |||||| ||||| |||||||| | | |||| ||||| |
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| T |
23847136 |
cattgttgttgccattgtacctttctactaatggagatactttgatattggcttgttatgaagatgacaaagcaattatctataacaagagagtaaataa |
23847037 |
T |
|
| Q |
209 |
agcagagagaattagaacttcttacaatctatgtcggttcttataagttgaaagtttggtgtcaacttcgactcattggaagtaagttctttcctaatat |
308 |
Q |
| |
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| ||||||||||| || || | |||||| ||||||||| || ||||||||||| | |||||||| ||| ||| ||||||||| || | || ||| |
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|
| T |
23847036 |
attagagagaattataattttcaaaaatctacgtcggttctcttatattgaaagtttgatttcaacttcaactaattcgaagtaagtactcttatattat |
23846937 |
T |
|
| Q |
309 |
tttttattgtttgaatatgtggtaattcatgcatgtggttttacagtctttgtcatgttataataacatagatgaatgattgtctattggtcattgttaa |
408 |
Q |
| |
|
||| |||||||| |||| ||||||||| || |||| |||||| ||| |||||| |||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
23846936 |
tttcaattgtttggatatatggtaattc-tgaatgttgttttaagatctgtgtcatattataataacatgtgtgaatgattatctattggtcattgttaa |
23846838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 336
Target Start/End: Original strand, 23840786 - 23841013
Alignment:
| Q |
109 |
cattgttgatgccattgtatctctctaagaatggatataccctgatattggattattatggagatgatgaagcagttatctatgatcaaagagaaaatag |
208 |
Q |
| |
|
|||||||| |||||||||| || |||| || ||| |||| ||||||||| || ||||| |||||| ||||| |||||||| | | |||| ||||| |
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| T |
23840786 |
cattgttgttgccattgtacctttctactaaaggagatactttgatattggcttgttatgaagatgacaaagcaattatctataacaagagagtaaatat |
23840885 |
T |
|
| Q |
209 |
agcagagagaattagaacttcttacaatctatgtcggttcttataagttgaaagtttggtgtcaacttcgactcattggaagtaagttctttcctaatat |
308 |
Q |
| |
|
|| ||||||||||| || || | | ||| |||||| ||||| || ||||||||||| || |||| ||| ||||||| ||||||||| || | || ||| |
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|
| T |
23840886 |
agtagagagaattaaaatttttaaaaatttatgtcagttctcttatgttgaaagtttagtttcaagttcaactcattcgaagtaagtactcttgtactat |
23840985 |
T |
|
| Q |
309 |
tttttattgtttgaatatgtggtaattc |
336 |
Q |
| |
|
||| ||||||||||||| ||||||||| |
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|
| T |
23840986 |
tttcaattgtttgaatatatggtaattc |
23841013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 23846060 - 23846112
Alignment:
| Q |
357 |
tttgtcatgttataataacatagatgaatgattgtctattggtcattgttaat |
409 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
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|
| T |
23846060 |
tttgtcatgttataataacatatgtgaataattatctattggtcattgttaat |
23846112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 11339467 - 11339390
Alignment:
| Q |
11 |
cgagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataaccttccaat |
88 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| | |||||||||||| |||||| |||||||||||||||| |||||||| |
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|
| T |
11339467 |
cgagtttggatttcaagaatcttggactcaattatttagaattgactactttaatcttgaaatgcataagcttccaat |
11339390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 11358936 - 11358835
Alignment:
| Q |
109 |
cattgttgatgccattgtatctctctaagaatggatataccctgatattggattattatggagatgatgaagcagttatctatgatcaaagagaaaatag |
208 |
Q |
| |
|
|||||||| |||||||||| || ||| | |||||| ||||| ||||||| | ||| ||||||||||||||| |||||| ||| |||| ||||||||||| |
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|
| T |
11358936 |
cattgttgttgccattgtacctttctgaaaatggagataccttgatattagcatatcatggagatgatgaagtagttatttataatcagagagaaaatag |
11358837 |
T |
|
| Q |
209 |
ag |
210 |
Q |
| |
|
|| |
|
|
| T |
11358836 |
ag |
11358835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 11345148 - 11345077
Alignment:
| Q |
12 |
gagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataacctt |
83 |
Q |
| |
|
||||||||| ||| ||| |||||||||| | |||||||||||| |||||| ||||| |||||||||||||| |
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|
| T |
11345148 |
gagtttggatttcaagaatcttggactcaattatttagaattgactactttaatcttcaaatgcataacctt |
11345077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 19746740 - 19746671
Alignment:
| Q |
13 |
agtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataacct |
82 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||| ||||||| |
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|
| T |
19746740 |
agtttggagttcaagagtcttggactttgttatttagaattgactactttaatcttgaaatgtataacct |
19746671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 33576193 - 33576259
Alignment:
| Q |
12 |
gagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcata |
78 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| |||| || ||||| |||| |||| |
|
|
| T |
33576193 |
gagtttggagttcaagagtcttggactcagttatttagaattgaatacgttaatcttcaaatacata |
33576259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 36340138 - 36340214
Alignment:
| Q |
12 |
gagtttggagttcgagagtcttggactcgactatttagaattggatactttgatcttgaaatgcataaccttccaat |
88 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||| |||| || ||||| |||| |||||||||||||| |
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|
| T |
36340138 |
gagtttggatctcaagagtcttggactcagttatttagaattaaatacattaatcttcaaatccataaccttccaat |
36340214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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