View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9168_low_12 (Length: 413)
Name: NF9168_low_12
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_12 |
 | |
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| [»] chr7 (3 HSPs) |
| |
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| [»] chr8 (6 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0707 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 24021410 - 24021814
Alignment:
| Q |
9 |
gagtttcgtgttggggaaagaagctacccttcatcgaaaattaaggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttcc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24021410 |
gagtttcgcgttggggaaagaagctacccttcatcgaaaattaaggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttcc |
24021509 |
T |
|
| Q |
109 |
ctttaattctttggaatagtgtcgtgcatttgagtggcactgtttgctccttggctgttgtggactatgctgatccttcttatgattacgagattattac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24021510 |
ctttaattctttggaatagtgtcgtgcatttgagtggcactgtttgctccttggctgttgtggactatgctgatccttcttatgattacgagattattac |
24021609 |
T |
|
| Q |
209 |
tcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24021610 |
tcatgttaatcgattcgtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcag |
24021709 |
T |
|
| Q |
309 |
ccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
24021710 |
ccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggaattcgagagt |
24021809 |
T |
|
| Q |
409 |
cttgg |
413 |
Q |
| |
|
||||| |
|
|
| T |
24021810 |
cttgg |
24021814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 52 - 413
Target Start/End: Original strand, 24030940 - 24031301
Alignment:
| Q |
52 |
aggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttccctttaattctttggaatagtgtcgtgcatttgagtggcactgt |
151 |
Q |
| |
|
||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
24030940 |
aggtcagtgttctcaatttggatgctgataattgttggagaaatattaacaatttccctttgattcttgggaatagtgttgtgcatttgagtggcactgt |
24031039 |
T |
|
| Q |
152 |
ttgctccttggctgttgtggactatgctgatccttcttatgattacgagattattactcatgttaatcgattcgtgattgtttcccttgatctttcgact |
251 |
Q |
| |
|
|| ||| |||||| || | ||||| | ||| || ||||||||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24031040 |
ttactcattggctattcagaactattttaatcgttgttatgattatgagactattactcatgttgatcacttcgtgattatttcccttgatctttcgacc |
24031139 |
T |
|
| Q |
252 |
gagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttctttcggaccacatttgcttttcgcacg |
351 |
Q |
| |
|
||||||||||| || | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24031140 |
gagacaaccattcagctattgttgccttccaagtttgatgaggtgccatgttttcagccaactcttcaagttctttcggaccacatttgcttttcgcacg |
24031239 |
T |
|
| Q |
352 |
atttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24031240 |
atttcaagaaaactgaatttgtcatatggaaaatgaatgagtttggagttcaagagtcttgg |
24031301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 402
Target Start/End: Complemental strand, 23999667 - 23999490
Alignment:
| Q |
230 |
tgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttctttcg |
329 |
Q |
| |
|
|||||||||| |||||| ||| | ||| ||||||||||||| | ||| | ||||||||| || ||| ||||||||||||||||| ||| | | |
|
|
| T |
23999667 |
tgtttcccttaatcttttgaccaatacatacatgcaatttttgctacctcctagttttgatgaagtcccacactttcagccaactcttcatgttttcatg |
23999568 |
T |
|
| Q |
330 |
gaccacatttgc-ttttcgcacgatttcaagag----aactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
||| || ||||| |||| ||| ||||||||| | ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
23999567 |
gactacctttgcttttttgcatgatttcaagggaactaactgaatttgttatatggaaaatgaaggagtttggagttc |
23999490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 203 - 413
Target Start/End: Complemental strand, 11338810 - 11338600
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||| | | |||||||| | ||||| |
|
|
| T |
11338810 |
tattactcatgttgatcaattcaagattgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgc |
11338711 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||| ||||||||| ||| |
|
|
| T |
11338710 |
tttcagccaactcttcaggttcttttggaccgactttgcttttcacatgatttcaagcaaactgaatttgttatatggcaaatgaaagagtttggatttc |
11338611 |
T |
|
| Q |
403 |
gagagtcttgg |
413 |
Q |
| |
|
||| |||||| |
|
|
| T |
11338610 |
aagaatcttgg |
11338600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 413
Target Start/End: Complemental strand, 11345335 - 11345125
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||||| ||||| ||||||||| ||||||||||| ||||||| | |||||||||||| ||| | |
|
|
| T |
11345335 |
tattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagc |
11345236 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||||||||| ||| ||||| | ||||||||| ||| |
|
|
| T |
11345235 |
tttcagccaactcttcaggttcttttggaccgactttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttc |
11345136 |
T |
|
| Q |
403 |
gagagtcttgg |
413 |
Q |
| |
|
||| |||||| |
|
|
| T |
11345135 |
aagaatcttgg |
11345125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 203 - 413
Target Start/End: Complemental strand, 11359213 - 11359003
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
||||||||||||| ||| ||| |||||| |||||||||||||| |||||| || ||||||||||| ||||||| | |||||||||||| ||||| |
|
|
| T |
11359213 |
tattactcatgttgatcagttcaagattgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgc |
11359114 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||| |||||||||| ||| ||||||| ||| | ||| ||| |
|
|
| T |
11359113 |
ttttagccaactcttcattttcttttggaccgactttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgaaagagatgggatttc |
11359014 |
T |
|
| Q |
403 |
gagagtcttgg |
413 |
Q |
| |
|
||| |||||| |
|
|
| T |
11359013 |
aagaatcttgg |
11359003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 190 - 413
Target Start/End: Complemental strand, 11339666 - 11339443
Alignment:
| Q |
190 |
atgattacgagattattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttga |
289 |
Q |
| |
|
||||||| ||| |||||||| |||| ||| |||| ||| |||||||||||||| || | ||||||| |||||||||| || ||||| | |||||| |
|
|
| T |
11339666 |
atgattatgagtctattactcgtgttgatcaattcaagatggtttcccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttga |
11339567 |
T |
|
| Q |
290 |
tgaggtgccatgttttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaat |
389 |
Q |
| |
|
|||||| || | ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||||||||| ||| |||||| |
|
|
| T |
11339566 |
tgaggtaccctactttcagccaactcttcaggttcttttggaccggctttgcttttcgcacgatttcaaggaaactcaatttgttatatggcaaatgagc |
11339467 |
T |
|
| Q |
390 |
gagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||||||| ||| ||| |||||| |
|
|
| T |
11339466 |
gagtttggatttcaagaatcttgg |
11339443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 11345494 - 11345433
Alignment:
| Q |
53 |
ggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttccctttaattc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
11345494 |
ggtcagagttctcagtttg---agtgatgattgttggagaaatattaacagttttcctttgattc |
11345433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 11338967 - 11338907
Alignment:
| Q |
54 |
gtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttccctttaattc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
11338967 |
gtcagagttctcagtttg---agtgatgattgttggagaaatattaacagttttcctttgattc |
11338907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 225 - 413
Target Start/End: Complemental strand, 19746906 - 19746718
Alignment:
| Q |
225 |
gtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||| | | ||||||||| || ||| ||||||||||||||||| |||| |
|
|
| T |
19746906 |
gtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcccacactttcagccaactcttcatgttc |
19746807 |
T |
|
| Q |
325 |
tttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
| |||| | ||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
19746806 |
tgatggactgcctttgcttttcgcacgatttcaagggaactgaatttgttatatggcaaatgaagaagtttggagttcaagagtcttgg |
19746718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 413
Target Start/End: Original strand, 33568820 - 33569030
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
|||| |||||||||| | || |||||||||||||||||||||||| | |||||| || ||||||||| | ||| | |||| |||||||||||||| |
|
|
| T |
33568820 |
tattcctcatgttaagctttttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgt |
33568919 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
| |||| || |||| || || |||| |||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
33568920 |
gtggtgccatctgttcaggtactgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttc |
33569019 |
T |
|
| Q |
403 |
gagagtcttgg |
413 |
Q |
| |
|
||||||||| |
|
|
| T |
33569020 |
acgagtcttgg |
33569030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 33576140 - 33576216
Alignment:
| Q |
337 |
tttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||| |||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
33576140 |
tttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttgg |
33576216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 5978997 - 5979073
Alignment:
| Q |
337 |
tttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| ||| ||||| ||||||||||| | |||||||||| |
|
|
| T |
5978997 |
tttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaaggagtttggagtccaagagtcttgg |
5979073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 34861971 - 34861895
Alignment:
| Q |
337 |
tttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||||||| ||| ||||| | || ||||||||||||||| ||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
34861971 |
tttgctttttgcatgattttaggaaaactgaatttgttatatggcaaatgaaggagtttggagttcgggagtcttgg |
34861895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 413
Target Start/End: Original strand, 36339973 - 36340161
Alignment:
| Q |
225 |
gtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc |
324 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| || ||| |||||| | ||| | | |||| | ||||||||||| || ||||| |||||| |||| |
|
|
| T |
36339973 |
gtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagccatctcttcgggttc |
36340072 |
T |
|
| Q |
325 |
tttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
| |||| | |||||||||| |||||||||||||||||||||||||| || ||| | ||||| ||||||||| || |||||||||| |
|
|
| T |
36340073 |
tgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttgg |
36340161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 413
Target Start/End: Original strand, 23840369 - 23840721
Alignment:
| Q |
52 |
aggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttccctttaattctttggaatagtgtcgtgcatttgagtggcactgt |
151 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||||||||||| |||| ||||||| | ||| ||||||||||||| |||||||| |||| || |
|
|
| T |
23840369 |
aggtcagagttcccaatttggatgatgat---tgttggagaaatatcaacattttccctatgattatttggaatagtgttgtgcatttatgtggtgaagt |
23840465 |
T |
|
| Q |
152 |
ttgctccttggctgttgtggactatgctgatccttcttatgattacgagattattactcatgttaatcgattcgtgattgtttcccttgatctttcgact |
251 |
Q |
| |
|
|| || |||||| | ||||| | |||||| ||||||| | | ||||||||||||| ||| | || ||||| ||||||||||||||||||| |
|
|
| T |
23840466 |
ttactggttggctatgcaaaactatttt-atcctttttatgataaggcatgtattactcatgttgatcaactcatgattctttcccttgatctttcgacc |
23840564 |
T |
|
| Q |
252 |
gagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttctttcggaccacatttgcttttcgcacg |
351 |
Q |
| |
|
|||||| ||| ||||||| | |||| |||||| ||| |||| | |||||||||||||| ||||||| ||||| | ||||||||||||| | |
|
|
| T |
23840565 |
gagacatacatccaattttcgaaaccttttgattttcatg-----ccatactaacagccaactcttcaggttcttttggaccgcctttgcttttcgcatg |
23840659 |
T |
|
| Q |
352 |
atttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||||||| ||||||||||||||| || ||| ||| ||||||| |||| ||||||||| |
|
|
| T |
23840660 |
atttcaagaaaactgaatttgttatatgacaaaggaaatagtttggggttcaggagtcttgg |
23840721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 411
Target Start/End: Complemental strand, 23847406 - 23847203
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
||||||||||||| ||| | |||||||| ||||||||||||||||||| |||||| ||| ||||||||| | |||| |||||| | |||||| |
|
|
| T |
23847406 |
tattactcatgttgatcaactcgtgattctttcccttgatctttcgaccgagacatacatccaatttttgaagtcttctgattttca-----tgccatac |
23847312 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
||| ||||||||| ||||||| ||||| | ||||||||||||| |||||||||| | |||||||||| ||| ||||||| |||||| | |||| |
|
|
| T |
23847311 |
gaacagtcaactcttccggttcttttggaccgcctttgcttttcgcatgatttcaagaaattagaatttgttacatggcaaatgaaagagtttagggttc |
23847212 |
T |
|
| Q |
403 |
gagagtctt |
411 |
Q |
| |
|
|||||||| |
|
|
| T |
23847211 |
aagagtctt |
23847203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 23847556 - 23847466
Alignment:
| Q |
52 |
aggtcagagttctcagtttggatgatgatgattgttggagaaatattaacaatttccctttaattctttggaatagtgtcgtgcatttgagtgg |
145 |
Q |
| |
|
||||||||||||||| ||| ||||||||| || |||||||||| |||| ||||||| | |||||| |||||||||| |||||||||||||| |
|
|
| T |
23847556 |
aggtcagagttctcaatttagatgatgat---tgctggagaaatacaaacactttccctatgattcttcggaatagtgttgtgcatttgagtgg |
23847466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 413
Target Start/End: Original strand, 5214 - 5424
Alignment:
| Q |
203 |
tattactcatgttaatcgattcgtgattgtttcccttgatctttcgactgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgt |
302 |
Q |
| |
|
|||| |||||||||| | || |||||||||||||||||||||||| | |||||| || ||||||||| | ||| | |||| |||||||||||||| |
|
|
| T |
5214 |
tattcctcatgttaagctttttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgt |
5313 |
T |
|
| Q |
303 |
tttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaaatgaatgagtttggagttc |
402 |
Q |
| |
|
| |||| || |||| || || |||| |||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
5314 |
gtggtgccatctgttcaggtactgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttc |
5413 |
T |
|
| Q |
403 |
gagagtcttgg |
413 |
Q |
| |
|
||||||||| |
|
|
| T |
5414 |
acgagtcttgg |
5424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 23086699 - 23086828
Alignment:
| Q |
284 |
ttttgatgaggtgccatgttttcagccaactcttcaagttctttcggaccacatttgcttttcgcacgatttcaagagaactgaatttgttatttggaaa |
383 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||| ||||| |||| | ||||||||||||| ||||| |||| | |||||||||||| ||| | |
|
|
| T |
23086699 |
ttttgatgaggtgccagaatatcagccatctcttcatgttctgaaggactgcctttgcttttcgcatgattttaagacgattgaatttgttatatggcag |
23086798 |
T |
|
| Q |
384 |
atgaatgagtttggagttcgagagtcttgg |
413 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |
|
|
| T |
23086799 |
atgaaggagtttggagttcaagagtcttgg |
23086828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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