View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_15 (Length: 407)
Name: NF9168_low_15
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 21993477 - 21993867
Alignment:
| Q |
1 |
aacagtgttagagtcacagtttctggtttgcttgaaatggacataagggtaaggcctattggagaaaaagaaaacaaggctcacaattaccaattaccat |
100 |
Q |
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| T |
21993477 |
aacagtgttagagtcacagtttctggtttgcttgaaatggacataagggtaaggcctattggagaaaaagaaaacaaggctcacaattaccaattaccat |
21993576 |
T |
|
| Q |
101 |
cagatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgt |
200 |
Q |
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| T |
21993577 |
cagatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgt |
21993676 |
T |
|
| Q |
201 |
tagtcctgttaagagaggagttgctatgccaatgatgggaggagaagacaagtaccaaactccatctcttttttcaacaacatgcaaactatgcaggttt |
300 |
Q |
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| T |
21993677 |
tagtcctgtcaagagaggtgttgctatgccaatgatgggaggagaagacaagtaccaaactccatctcttttttcaacaacatgcaaactatgcaggttt |
21993776 |
T |
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| Q |
301 |
cagaggccttccactagccaaggactcattgctcaatattgataattcatgaattatgaaaaataagagattctttgtattatgaaaataa |
391 |
Q |
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| T |
21993777 |
cagaggccttccactagccaaggactcattgctcaatattgataattcatgaattatgaaaaataagagattctttgtattatgaaaataa |
21993867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 22010696 - 22011074
Alignment:
| Q |
1 |
aacagtgttagagtcacagtttctggtttgcttgaaatggacataagggtaaggcctattggagaaaaagaaaacaaggctcacaattaccaattaccat |
100 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
22010696 |
aacagtgttagagtgacagtttctggtttgcttgaaatggacataagggtaagacctattggagaaaaggaaaacaaggctcacaattaccaattgccat |
22010795 |
T |
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| Q |
101 |
cagatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgt |
200 |
Q |
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| T |
22010796 |
ctgatgatgcttttgctcatttggagacacaattcaagtttaaaaatcctacagattctattgaaggagttttaggtcaaacttataggccaagttatgt |
22010895 |
T |
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| Q |
201 |
tagtcctgttaagagaggagttgctatgccaatgatgggaggagaagacaagtaccaaactccatctcttttttcaacaacatgcaaactatgcaggttt |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
22010896 |
tagtcctgttaagagaggtgttgctatgccaatgatgggaggagaagacaagtaccaaactccatctctcttttcaacaacctgcaaactctgcaggttc |
22010995 |
T |
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| Q |
301 |
cagaggccttccactagccaaggactcattgctcaatattgataat-tcatgaattatgaaaaataagagattctttgt |
378 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||| || ||||| ||||||||||||||||||||||| |
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| T |
22010996 |
cagaggccttccactagccaaggactaattgctgaatactgataatatcttgaatcatgaaaaataagagattctttgt |
22011074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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