View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9168_low_16 (Length: 397)
Name: NF9168_low_16
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 6126013 - 6126379
Alignment:
| Q |
16 |
gagatgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagag |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126013 |
gagatgagaaatatatttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagag |
6126112 |
T |
|
| Q |
116 |
tgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattcca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126113 |
tgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattcca |
6126212 |
T |
|
| Q |
216 |
agccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatattactcgttgggattcatttttgcagtggttgtttctccat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6126213 |
agccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatattactcgttgggattcattttcgcagtggttgtttctccat |
6126312 |
T |
|
| Q |
316 |
ccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaagatgg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6126313 |
ccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaagatgg |
6126379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 6172342 - 6171976
Alignment:
| Q |
16 |
gagatgagaaatatacttcattcaagaatggaaaaatgttggaatcaaatgaactttcactcaaccgcatcacggaagacacaatactagtaataaagag |
115 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||||| || ||||| |
|
|
| T |
6172342 |
gagatgagaaatatatttcattcaataatggaaaaatgttggaatcaaatgacctgtcactcaattgcatcacggaagacacaattctagttatgaagag |
6172243 |
T |
|
| Q |
116 |
tgttgcattgtacaatgtactagtagataaacgttgttccgaaattcatagctacaattatgatagtgttgtggtatgtttaccaggaagtagaattcca |
215 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
6172242 |
tgttgcattgtataatgtactagtacataaacgttgttcagaaactcatagctacaattatgatagtgttgtggtgtatttaccaggaagcagaattcca |
6172143 |
T |
|
| Q |
216 |
agccagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatattactcgttgggattcatttttgcagtggttgtttctccat |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172142 |
agcaagctcaaatacaaaacatcagattccaaactaactattggattttcggacatatattactcgttgggattcatttttgcagtggttgtttctccat |
6172043 |
T |
|
| Q |
316 |
ccagtggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaagatgg |
382 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172042 |
ccaatggaatgaagaatgagcgtggcagcggtgctaaaattcaatgcaaatgttatagggaagatgg |
6171976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University