View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9168_low_19 (Length: 325)

Name: NF9168_low_19
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9168_low_19
NF9168_low_19
[»] chr2 (27 HSPs)
chr2 (66-325)||(4098405-4098664)
chr2 (1-66)||(14582925-14582990)
chr2 (1-66)||(15944557-15944622)
chr2 (1-66)||(15953072-15953137)
chr2 (1-66)||(35138593-35138658)
chr2 (1-66)||(35146929-35146994)
chr2 (1-66)||(41233844-41233909)
chr2 (1-69)||(17687398-17687466)
chr2 (3-69)||(42574555-42574621)
chr2 (1-66)||(38168357-38168422)
chr2 (3-66)||(42565931-42565994)
chr2 (1-66)||(20372313-20372378)
chr2 (1-66)||(20621518-20621583)
chr2 (1-66)||(25483601-25483666)
chr2 (1-66)||(25491207-25491272)
chr2 (1-66)||(44372705-44372770)
chr2 (1-66)||(44388616-44388681)
chr2 (5-67)||(24285695-24285757)
chr2 (5-67)||(34070608-34070670)
chr2 (5-66)||(24292372-24292433)
chr2 (5-66)||(42249459-42249520)
chr2 (5-64)||(26903337-26903396)
chr2 (4-66)||(27606647-27606709)
chr2 (1-38)||(35037884-35037921)
chr2 (5-66)||(21322814-21322875)
chr2 (4-67)||(35303736-35303799)
chr2 (16-66)||(20917520-20917570)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-69)||(35356-35424)
[»] chr3 (23 HSPs)
chr3 (2-69)||(17628262-17628329)
chr3 (1-66)||(50824352-50824417)
chr3 (1-66)||(50851443-50851508)
chr3 (1-66)||(8154644-8154709)
chr3 (1-66)||(9525434-9525499)
chr3 (1-66)||(41006556-41006621)
chr3 (1-66)||(41015336-41015401)
chr3 (1-68)||(9555108-9555175)
chr3 (2-67)||(2211238-2211303)
chr3 (1-66)||(14538605-14538670)
chr3 (1-66)||(17933655-17933720)
chr3 (1-66)||(27341335-27341400)
chr3 (2-66)||(28470218-28470282)
chr3 (4-66)||(17919199-17919261)
chr3 (4-58)||(16816207-16816261)
chr3 (5-66)||(8197700-8197761)
chr3 (9-66)||(18039011-18039068)
chr3 (5-70)||(18349552-18349617)
chr3 (4-66)||(21186747-21186809)
chr3 (5-66)||(30480-30541)
chr3 (4-64)||(43470556-43470615)
chr3 (39-68)||(6973261-6973290)
chr3 (39-67)||(13604165-13604193)
[»] chr7 (12 HSPs)
chr7 (1-67)||(18304392-18304458)
chr7 (1-66)||(12978455-12978520)
chr7 (5-66)||(4941581-4941642)
chr7 (1-66)||(10439937-10440002)
chr7 (1-66)||(4952397-4952462)
chr7 (1-66)||(13831500-13831565)
chr7 (1-66)||(13839531-13839596)
chr7 (2-66)||(30244775-30244839)
chr7 (8-66)||(21663030-21663088)
chr7 (8-66)||(30245568-30245626)
chr7 (8-58)||(30255420-30255470)
chr7 (8-67)||(13486328-13486387)
[»] chr1 (13 HSPs)
chr1 (1-67)||(31539953-31540019)
chr1 (1-66)||(31548523-31548588)
chr1 (3-66)||(35104066-35104129)
chr1 (1-66)||(3432890-3432955)
chr1 (1-66)||(29221488-29221553)
chr1 (1-66)||(32137754-32137819)
chr1 (1-67)||(41746693-41746759)
chr1 (9-66)||(44320200-44320257)
chr1 (5-67)||(21498902-21498964)
chr1 (17-64)||(28457556-28457604)
chr1 (4-64)||(51058391-51058450)
chr1 (32-66)||(20314058-20314092)
chr1 (5-67)||(52100016-52100078)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-66)||(121228-121293)
[»] chr8 (15 HSPs)
chr8 (1-66)||(17973565-17973630)
chr8 (1-66)||(30938282-30938347)
chr8 (1-66)||(26876054-26876119)
chr8 (1-66)||(39837562-39837627)
chr8 (1-66)||(39845605-39845670)
chr8 (3-66)||(1407075-1407138)
chr8 (1-66)||(4839782-4839847)
chr8 (1-66)||(25579812-25579877)
chr8 (1-66)||(26873604-26873669)
chr8 (1-66)||(17664640-17664705)
chr8 (1-66)||(17683796-17683861)
chr8 (5-66)||(6670711-6670772)
chr8 (5-66)||(4582204-4582265)
chr8 (9-67)||(6663041-6663099)
chr8 (9-67)||(6743443-6743501)
[»] chr6 (16 HSPs)
chr6 (1-66)||(5004061-5004126)
chr6 (1-66)||(5994699-5994764)
chr6 (1-66)||(23925335-23925400)
chr6 (2-67)||(13825702-13825767)
chr6 (1-66)||(25506541-25506606)
chr6 (1-66)||(25550295-25550360)
chr6 (1-66)||(30824529-30824594)
chr6 (1-66)||(35091676-35091741)
chr6 (3-66)||(11279837-11279900)
chr6 (1-64)||(25991852-25991915)
chr6 (1-66)||(33298085-33298150)
chr6 (14-66)||(5489132-5489184)
chr6 (4-66)||(15391614-15391676)
chr6 (12-66)||(13490193-13490247)
chr6 (5-66)||(11053702-11053764)
chr6 (5-66)||(30114444-30114505)
[»] chr5 (17 HSPs)
chr5 (1-66)||(24956846-24956911)
chr5 (1-66)||(24965309-24965374)
chr5 (1-66)||(1728159-1728224)
chr5 (1-66)||(20372913-20372978)
chr5 (1-66)||(20398635-20398700)
chr5 (1-66)||(29186278-29186343)
chr5 (1-66)||(43598046-43598111)
chr5 (1-66)||(43603538-43603603)
chr5 (1-66)||(43609030-43609095)
chr5 (3-66)||(28843940-28844003)
chr5 (3-66)||(28852550-28852613)
chr5 (1-66)||(19223555-19223620)
chr5 (1-66)||(23350076-23350141)
chr5 (1-66)||(31421789-31421854)
chr5 (3-66)||(31410890-31410953)
chr5 (5-69)||(41099780-41099844)
chr5 (17-66)||(21929236-21929285)
[»] chr4 (11 HSPs)
chr4 (1-66)||(12996476-12996541)
chr4 (1-66)||(52295604-52295669)
chr4 (1-66)||(8094282-8094347)
chr4 (1-66)||(8103088-8103153)
chr4 (1-66)||(27343691-27343756)
chr4 (1-67)||(4523680-4523746)
chr4 (1-66)||(21532304-21532369)
chr4 (4-66)||(12428481-12428543)
chr4 (9-66)||(10638328-10638385)
chr4 (4-66)||(33188766-33188827)
chr4 (16-68)||(3424329-3424381)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-66)||(10993-11058)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-66)||(33035-33100)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-66)||(15813-15878)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-66)||(40833-40898)
[»] scaffold0209 (1 HSPs)
scaffold0209 (3-66)||(86-149)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-66)||(23464-23522)
[»] scaffold0431 (1 HSPs)
scaffold0431 (4-66)||(139-201)
[»] scaffold0173 (1 HSPs)
scaffold0173 (4-66)||(932-994)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-66)||(4390-4455)
[»] scaffold0991 (1 HSPs)
scaffold0991 (5-69)||(377-441)
[»] scaffold0048 (1 HSPs)
scaffold0048 (20-66)||(7648-7694)
[»] scaffold0170 (1 HSPs)
scaffold0170 (4-68)||(7193-7257)
[»] scaffold0863 (1 HSPs)
scaffold0863 (5-66)||(376-437)
[»] scaffold0044 (2 HSPs)
scaffold0044 (5-66)||(81790-81851)
scaffold0044 (5-66)||(65542-65603)
[»] scaffold0015 (1 HSPs)
scaffold0015 (5-66)||(192528-192589)
[»] scaffold1487 (1 HSPs)
scaffold1487 (20-59)||(762-801)
[»] scaffold0514 (1 HSPs)
scaffold0514 (5-66)||(10912-10973)
[»] scaffold0222 (1 HSPs)
scaffold0222 (4-69)||(20485-20550)
[»] scaffold0389 (1 HSPs)
scaffold0389 (5-66)||(416-477)
[»] scaffold0484 (1 HSPs)
scaffold0484 (17-66)||(11457-11507)
[»] scaffold0027 (1 HSPs)
scaffold0027 (33-66)||(65710-65743)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-66)||(61288-61347)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 66 - 325
Target Start/End: Complemental strand, 4098664 - 4098405
Alignment:
Q  66 acatggtatctgaattgctagaggggcttttgtaggaaagtcaaaacaacaagtattcaacttttcccaagatatggggtggaagaaactaaaagggtgg 165  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4098664 acatggtatctgaattgctagaggggtttttgtaggaaagtcaaaacaacaagtattcaacttttcccaagatatggggtggaagaaactaaaagggtgg 4098565  T
Q  166 aaatgaaacttcttacctttttcagcgaggaaggtccttattaaagcagttattcaagtcattcctacttatgtcatgagttttttaaagcttccggata 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4098564 aaatgaaacttcttacctttttcagcggggaaggtccttattaaagcagttatttaagtcattcctacttatgtcatgagttttttaaagcttccggata 4098465  T
Q  266 gcttttgcgaccacattgaaagcatgatttgtaaattttggtggtgatgcaaacaagatg 325  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4098464 gcttttgcgaccacattgaaagcatgatttgtaaattttgatggtgatgcaaacaagatg 4098405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14582990 - 14582925
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14582990 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15944557 - 15944622
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15944557 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15953072 - 15953137
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15953072 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35138658 - 35138593
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138658 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35146994 - 35146929
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35146994 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41233844 - 41233909
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41233844 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17687398 - 17687466
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17687398 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 17687466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 42574555 - 42574621
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42574555 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacacat 42574621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38168357 - 38168422
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38168357 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggagtatgaca 38168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42565931 - 42565994
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42565931 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20372313 - 20372378
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  20372313 cgactttaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 20372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20621583 - 20621518
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621583 cgacttcaaaaacacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20621518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25483666 - 25483601
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25483666 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 25483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25491272 - 25491207
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25491272 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 25491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44372770 - 44372705
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  44372770 cgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44372705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44388681 - 44388616
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  44388681 cgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 24285757 - 24285695
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||| |||||| |||||| |||| |||| |||||||||||||||||||||||||||||||    
T  24285757 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgacac 24285695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 34070608 - 34070670
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||| |||||| |||||| |||| |||||||||||||| |||||||||||||||||||||    
T  34070608 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgatcaaaatttggggtatgacac 34070670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 24292433 - 24292372
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||| ||||||||||||||||||||||||||||||    
T  24292433 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24292372  T

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Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 42249459 - 42249520
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| ||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  42249459 tttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 42249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 26903337 - 26903396
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||| ||||||||    
T  26903337 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatga 26903396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 27606647 - 27606709
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||||||||| | ||| ||||||||||||| |||||||||||| ||||||||    
T  27606647 ctttaaaagtacgaataaaattgataaaaatagagaaaagtagtcaaaatttggagtatgaca 27606709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35037921 - 35037884
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35037921 cgactttaaaaatacgaataaaatgggtaagaatagag 35037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 21322814 - 21322875
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||  |||||| ||||||||||||||||||||||||||||    
T  21322814 tttaaaaatacgaataaaatttggtacaaataga-aaaagtggtcaaaatttggggtatgaca 21322875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 35303799 - 35303736
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||| |||||| |||||||| |||||| |  |||||||| | ||||||||||||||||||||||    
T  35303799 cttttaaaataagaataaaaggggtaaaatcagagaaaaatagtcaaaatttggggtatgacac 35303736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 20917570 - 20917520
Alignment:
Q  16 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||  ||| |||||||||||||||||||||||| | ||||||||    
T  20917570 gaataaaatgaataaaaatagagaaaagtggtcaaaatttagagtatgaca 20917520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35356 - 35424
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35356 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 35424  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 17628329 - 17628262
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628329 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 17628262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50824417 - 50824352
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50824417 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50851443 - 50851508
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50851443 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8154644 - 8154709
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8154644 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 8154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9525434 - 9525499
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9525434 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 9525499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41006621 - 41006556
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41006621 cgactttaaaaatacgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41015401 - 41015336
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41015401 cgactttaaaaatacgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41015336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9555108 - 9555175
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaca 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9555108 cgactttaaaaatacgagtaaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacaca 9555175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 2211303 - 2211238
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  2211303 gactttaaaaatacgaataaaataggtaagaatagagaaaagtggtcaaaatttagggtatgacac 2211238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14538605 - 14538670
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14538605 cgactttaaaaatatgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 14538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17933720 - 17933655
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  17933720 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaattggtcaaaatttggggtatgaca 17933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27341335 - 27341400
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27341335 cgactttaaaaatatgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 27341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 28470218 - 28470282
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28470218 gactttaaaaatacgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 28470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 17919261 - 17919199
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17919261 ctttaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 16816207 - 16816261
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggg 58  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  16816207 ctttaaaaatacgaataaaatgagtaaaaatagagaaaagtggtcaaaatttggg 16816261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 8197700 - 8197761
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  8197700 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 8197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18039068 - 18039011
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  18039068 aaaatacgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgaca 18039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 18349617 - 18349552
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacatg 70  Q
    ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||    
T  18349617 tttaaaagtacgaataaaatgtgtaaaaatagagaaaagttgtcaaaatttggggtatcacacatg 18349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 21186809 - 21186747
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||    
T  21186809 ctttaaaagtacgaataaaatggataaaaacagataaaagtggtcaaaatttggggtatgaca 21186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 30480 - 30541
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| ||| || |||||| |||| |||||||||||||||||||||||||||||||||||    
T  30480 tttaaaagtacaaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 30541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 43470556 - 43470615
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||    
T  43470556 ctttaaaaatacgaataaaaagggtaaaaataga-aaaagtagtcaaaatttggggtatga 43470615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 6973261 - 6973290
Alignment:
Q  39 aaaagtggtcaaaatttggggtatgacaca 68  Q
    ||||||||||||||||||||||||||||||    
T  6973261 aaaagtggtcaaaatttggggtatgacaca 6973290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 13604165 - 13604193
Alignment:
Q  39 aaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||||||||||||||    
T  13604165 aaaagtggtcaaaatttggggtatgacac 13604193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18304392 - 18304458
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18304392 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 18304458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12978520 - 12978455
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12978520 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 4941581 - 4941642
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941581 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 4941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10440002 - 10439937
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10440002 cgactttaaaaatacgaataaaatgggcaagaatagagaaaagtggtcaaaatttggggtatgaca 10439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4952397 - 4952462
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  4952397 cgactttaaaaatacgaataaaatgggtaagaatagataaaagtggtcaaaatttgaggtatgaca 4952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13831565 - 13831500
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  13831565 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttagggtatgaca 13831500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13839596 - 13839531
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  13839596 cgactttaaaaatacgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 13839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 30244839 - 30244775
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  30244839 gactttaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 21663030 - 21663088
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  21663030 aaaaatacgaataaaatgggtaaaaacagataaaagtgatcaaaatttggggtatgaca 21663088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30245626 - 30245568
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  30245626 aaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaaatttgggtatgaca 30245568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 30255470 - 30255420
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggg 58  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  30255470 aaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttggg 30255420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 13486328 - 13486387
Alignment:
Q  8 aaaaatacgaataaaatggg-taagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||  | ||| |||||| ||||||||||||||||||| |||||||||    
T  13486328 aaaaatacgaataaaatttgataaaaataga-aaaagtggtcaaaatttggtgtatgacac 13486387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31540019 - 31539953
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31540019 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 31539953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31548588 - 31548523
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31548588 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 35104066 - 35104129
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35104066 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3432890 - 3432955
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3432890 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 3432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29221488 - 29221553
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  29221488 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtagtcaaaatttggggtatgaca 29221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32137754 - 32137819
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  32137754 cgactttaaaaatacgaataaaatggataagaatagagaaaagtgatcaaaatttggggtaagaca 32137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41746693 - 41746759
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  41746693 cgactttaaaaatatgaataaaatggataagaatagataaaagtggtcaaaatttgggatatgacac 41746759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44320200 - 44320257
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  44320200 aaaatacgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgaca 44320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 21498902 - 21498964
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||| ||||||  ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21498902 tttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgacac 21498964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28457604 - 28457556
Alignment:
Q  17 aataaaatgggtaagaata-gagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||| || | |||||||||||||||||||||||||||||    
T  28457604 aataaaatgggtaaaaaaacgagaaaagtggtcaaaatttggggtatga 28457556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 51058391 - 51058450
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    ||||||||||||||||||||||  || ||| | ||||||||| ||||||||||||||||||    
T  51058391 ctttaaaaatacgaataaaatgaata-gaacaaagaaaagtgatcaaaatttggggtatga 51058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 20314058 - 20314092
Alignment:
Q  32 aatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||| ||||||||||||||||||||||||||||    
T  20314058 aatagaaaaaagtggtcaaaatttggggtatgaca 20314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 52100078 - 52100016
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||| |||||| |||||| |||| || |||||||| |||||||||||| || ||||||||    
T  52100078 tttaaaagtacgaacaaaatgtgtaaaaacagagaaaaatggtcaaaatttaggatatgacac 52100016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 121293 - 121228
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  121293 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 121228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17973630 - 17973565
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17973630 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30938347 - 30938282
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30938347 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26876054 - 26876119
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876054 cgacattaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39837562 - 39837627
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39837562 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39845605 - 39845670
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39845605 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 1407075 - 1407138
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1407075 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1407138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4839782 - 4839847
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  4839782 cgactttaaaaatacgaataaaataggtaagaatagagaaaagcggtcaaaatttggggtatgaca 4839847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25579812 - 25579877
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  25579812 cgactttaaaaatacgaataaaatgggtaagaatagataaaagtggtcaaaatttagggtatgaca 25579877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26873604 - 26873669
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26873604 cgacattacaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26873669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17664640 - 17664705
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17664640 cgactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17683796 - 17683861
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17683796 cgactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 6670772 - 6670711
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  6670772 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgaca 6670711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 4582265 - 4582204
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| || ||| |||||| |||| ||||||||||||||||||||||||  |||||||||    
T  4582265 tttaaaagtatgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 4582204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 6663099 - 6663041
Alignment:
Q  9 aaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||||||||||||  ||||| |||||| ||||||||| |||||||||||||||||||    
T  6663099 aaaatacgaataaaatttggtaaaaataga-aaaagtggttaaaatttggggtatgacac 6663041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 6743501 - 6743443
Alignment:
Q  9 aaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    ||||||||||||||||  ||||| |||||| ||||||||| |||||||||||||||||||    
T  6743501 aaaatacgaataaaatttggtaaaaataga-aaaagtggttaaaatttggggtatgacac 6743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5004126 - 5004061
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004126 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5994764 - 5994699
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5994764 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23925400 - 23925335
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23925400 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 13825767 - 13825702
Alignment:
Q  2 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13825767 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacac 13825702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25506541 - 25506606
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25506541 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 25506606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25550360 - 25550295
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25550360 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 25550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30824529 - 30824594
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824529 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35091676 - 35091741
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091676 cgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11279900 - 11279837
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11279900 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 11279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25991915 - 25991852
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatga 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25991915 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaacatttggggtatga 25991852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33298150 - 33298085
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  33298150 cgactttaaaaatacgaataaaatgggtaaggatagagaaaagtggtcaaaagttggggtatgaca 33298085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 5489132 - 5489184
Alignment:
Q  14 acgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489132 acgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5489184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 15391614 - 15391676
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  15391614 ctttaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttgggatatgaca 15391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 13490247 - 13490193
Alignment:
Q  12 atacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  13490247 atacgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 11053764 - 11053702
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  11053764 tttaaaaatacgaataaaatttggtaaaaatagaaaaaagtggtcaaaatttggggtatgaca 11053702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 30114505 - 30114444
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  30114505 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgaca 30114444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24956846 - 24956911
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24956846 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24965309 - 24965374
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24965309 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1728159 - 1728224
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1728159 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20372913 - 20372978
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20372913 cgactttaaaaatacgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20398635 - 20398700
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20398635 cgactttaaaaatacgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20398700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29186278 - 29186343
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29186278 cgactttaaaaatacgaataaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 29186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43598046 - 43598111
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43598046 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43603538 - 43603603
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43603538 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43609030 - 43609095
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43609030 cgactttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43609095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 28844003 - 28843940
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28844003 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 28852613 - 28852550
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28852613 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19223620 - 19223555
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19223620 cgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23350076 - 23350141
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  23350076 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaaatggtcaaaatttggggtatgaca 23350141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31421854 - 31421789
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31421854 cgacttcaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaattttgggtatgaca 31421789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 31410953 - 31410890
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  31410953 actttaaaaatacgaataaaatgggttagaatagagaaatgtggtcaaaatttggggtatgaca 31410890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 41099780 - 41099844
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    ||||||| ||||||  ||||| |||| |||||| ||||||||||||||||||||||||| |||||    
T  41099780 tttaaaagtacgaacgaaatgtgtaaaaatagataaaagtggtcaaaatttggggtatggcacat 41099844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 21929285 - 21929236
Alignment:
Q  17 aataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| ||  ||||||| | |||||||||||||||||||||    
T  21929285 aataaaatgggtaaaaagcgagaaaaattgtcaaaatttggggtatgaca 21929236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12996541 - 12996476
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12996541 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 52295669 - 52295604
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52295669 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 52295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8094282 - 8094347
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8094282 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8103088 - 8103153
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8103088 cgactttaaaaatacaaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8103153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27343691 - 27343756
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27343691 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 27343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4523680 - 4523746
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 67  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  4523680 cgactttaaaaatacgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgacac 4523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21532304 - 21532369
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  21532304 cgactttaaaaatacgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 21532369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 12428481 - 12428543
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12428481 ctttaaaaatacgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgaca 12428543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 10638385 - 10638328
Alignment:
Q  9 aaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10638385 aaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 10638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 33188827 - 33188766
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||| ||||||| || ||| |||||| |||||| |||||||||||||||||||||    
T  33188827 ctttaaaaatacaaataaaaaggataaaaataga-aaaagttgtcaaaatttggggtatgaca 33188766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 3424381 - 3424329
Alignment:
Q  16 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaca 68  Q
    |||||||| |||||| | ||||||||| || ||||||||||||||||||||||    
T  3424381 gaataaaaggggtaaaattagagaaaaatgatcaaaatttggggtatgacaca 3424329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11058 - 10993
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11058 cgactttaacaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 10993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33100 - 33035
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33100 cgactttaaaaatacgtataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 33035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15878 - 15813
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15878 cgactttaaaaatacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40833 - 40898
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40833 cgactttaaaaatacgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 40898  T

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Target: scaffold0209 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 86 - 149
Alignment:
Q  3 actttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  86 actttaaaaatacgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 149  T

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Target: scaffold0016 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 23522 - 23464
Alignment:
Q  8 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23522 aaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23464  T

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Target: scaffold0431 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 201 - 139
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  201 ctttaaaaatacgaataaaatgggtagaaatagagaaaagtggtcaaaatttggggtatgaca 139  T

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Target: scaffold0173 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 932 - 994
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  932 ctttaaaaatacgaataaaatgggtaagaatagagaaagctggtcaaaatttggggtatgaca 994  T

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Target: scaffold0632 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4455 - 4390
Alignment:
Q  1 cgactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  4455 cgactttaaaaatatgaataaaatgggtaagaatagagaaaaaatgtcaaaatttggggtatgaca 4390  T

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Target: scaffold0991 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 377 - 441
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  377 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgacacat 441  T

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Target: scaffold0048 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 7648 - 7694
Alignment:
Q  20 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7648 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 7694  T

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Target: scaffold0170 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 7193 - 7257
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacaca 68  Q
    |||||||| ||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  7193 ctttaaaagtacaaataaaatgggtaaaaacagagaaaagtggtcaaaatttagggtatgacaca 7257  T

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Target: scaffold0863 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 376 - 437
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||| ||||||||||||||||||||||||||||||    
T  376 tttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 437  T

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Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 81790 - 81851
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| |||||||||||||||||||||||| ||||||||||    
T  81790 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgaca 81851  T

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Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 65542 - 65603
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| ||||||||||||||  |||||||||||||||||||    
T  65542 tttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgtacaaaatttggggtatgaca 65603  T

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Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 192589 - 192528
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||||||    
T  192589 tttaaaagtacgaacaaaatctgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 192528  T

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Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 762 - 801
Alignment:
Q  20 aaaatgggtaagaatagagaaaagtggtcaaaatttgggg 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  762 aaaatgggtaagaatagagaaaagtggtcaaaatttgggg 801  T

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Target: scaffold0514 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 10912 - 10973
Alignment:
Q  5 tttaaaaatacgaataaaatg-ggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  10912 tttaaaaatacgaataaaatttggtaaaaataga-aaaagtggtcaaaatttggggtatgaca 10973  T

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Target: scaffold0222 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 20485 - 20550
Alignment:
Q  4 ctttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 69  Q
    |||||||| |||||| |||||| |||| |  | |||||||||||||||||||||||||||||||||    
T  20485 ctttaaaagtacgaacaaaatgtgtaaaaccatagaaaagtggtcaaaatttggggtatgacacat 20550  T

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Target: scaffold0389 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 477 - 416
Alignment:
Q  5 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||| |||||| |||||| |||| | || ||||||||||||||||||| ||||||||||    
T  477 tttaaaagtacgaacaaaatgtgtaaaattaaagaaaagtggtcaaaatttagggtatgaca 416  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 11457 - 11507
Alignment:
Q  17 aataaaatgggtaagaatag-agaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||||||| | |||| |||||||||||||||||| ||||    
T  11457 aataaaatgggtaagaatagaaaaaaaatggtcaaaatttggggtacgaca 11507  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 65710 - 65743
Alignment:
Q  33 atagagaaaagtggtcaaaatttggggtatgaca 66  Q
    ||||||||||||||||||||||| ||||||||||    
T  65710 atagagaaaagtggtcaaaatttagggtatgaca 65743  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 61347 - 61288
Alignment:
Q  8 aaaaatacgaataaaa-tgggtaagaa-tagagaaaagtggtcaaaatttggggtatgaca 66  Q
    |||||||||||||||| || |||| || |||||||| ||||||||||||||||||||||||    
T  61347 aaaaatacgaataaaaatgagtaaaaaatagagaaa-gtggtcaaaatttggggtatgaca 61288  T

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