View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9168_low_2 (Length: 1056)

Name: NF9168_low_2
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9168_low_2
NF9168_low_2
[»] chr1 (36 HSPs)
chr1 (636-1033)||(26686191-26686572)
chr1 (756-1034)||(33169169-33169429)
chr1 (18-214)||(23991745-23991941)
chr1 (886-1037)||(16640285-16640436)
chr1 (18-213)||(36036681-36036874)
chr1 (961-1037)||(6802174-6802250)
chr1 (768-1033)||(37574902-37575174)
chr1 (760-868)||(11647276-11647384)
chr1 (960-1028)||(11647114-11647182)
chr1 (751-868)||(42817708-42817825)
chr1 (940-1037)||(49898380-49898477)
chr1 (961-1033)||(25011610-25011682)
chr1 (848-907)||(4642012-4642071)
chr1 (960-1035)||(9527012-9527087)
chr1 (849-907)||(6802039-6802097)
chr1 (961-1035)||(25007431-25007505)
chr1 (961-1035)||(27460663-27460737)
chr1 (962-1035)||(14727285-14727358)
chr1 (943-1027)||(1428436-1428520)
chr1 (961-1037)||(44238933-44239009)
chr1 (961-1035)||(27584087-27584161)
chr1 (961-1033)||(4642144-4642216)
chr1 (371-419)||(26685720-26685768)
chr1 (856-907)||(49898490-49898541)
chr1 (961-1035)||(37154064-37154138)
chr1 (961-1035)||(44305379-44305453)
chr1 (962-1035)||(8239246-8239319)
chr1 (940-992)||(3216121-3216173)
chr1 (844-900)||(33069932-33069988)
chr1 (962-1030)||(48940503-48940571)
chr1 (856-907)||(34459223-34459274)
chr1 (781-827)||(16640197-16640243)
chr1 (954-992)||(18606087-18606125)
chr1 (837-899)||(31844584-31844646)
chr1 (964-1037)||(4773972-4774045)
chr1 (962-1035)||(31844707-31844780)
[»] chr4 (34 HSPs)
chr4 (19-250)||(44257969-44258200)
chr4 (19-247)||(49608638-49608866)
chr4 (758-1037)||(6017082-6017340)
chr4 (138-248)||(51870814-51870924)
chr4 (154-238)||(45681512-45681596)
chr4 (756-876)||(15034361-15034481)
chr4 (882-1037)||(15034470-15034623)
chr4 (20-191)||(7260927-7261099)
chr4 (962-1025)||(31929118-31929181)
chr4 (964-1035)||(50383856-50383927)
chr4 (961-1035)||(1585677-1585751)
chr4 (866-975)||(31928971-31929080)
chr4 (962-1035)||(4552153-4552226)
chr4 (866-938)||(41955359-41955430)
chr4 (961-1035)||(32005882-32005956)
chr4 (962-1035)||(46645559-46645632)
chr4 (848-907)||(2521873-2521932)
chr4 (961-1035)||(10715622-10715697)
chr4 (961-1035)||(10929392-10929467)
chr4 (961-1032)||(40969195-40969266)
chr4 (961-1035)||(2017511-2017585)
chr4 (837-907)||(25237691-25237761)
chr4 (961-1031)||(41972511-41972581)
chr4 (962-1035)||(2576127-2576200)
chr4 (962-1035)||(4728514-4728587)
chr4 (958-1037)||(32828181-32828260)
chr4 (844-899)||(40969314-40969369)
chr4 (845-907)||(8901917-8901979)
chr4 (837-899)||(10058627-10058689)
chr4 (961-1035)||(31364103-31364177)
chr4 (781-843)||(31928907-31928969)
chr4 (804-854)||(41955421-41955471)
chr4 (858-907)||(4651177-4651226)
chr4 (992-1037)||(8901769-8901814)
[»] chr8 (19 HSPs)
chr8 (19-250)||(6930695-6930926)
chr8 (19-250)||(44723493-44723724)
chr8 (19-191)||(27226295-27226467)
chr8 (756-975)||(21137889-21138107)
chr8 (962-1033)||(21138133-21138204)
chr8 (768-876)||(12478256-12478363)
chr8 (756-870)||(8968491-8968605)
chr8 (962-1037)||(8968295-8968370)
chr8 (882-1037)||(12478100-12478267)
chr8 (961-1035)||(24965000-24965074)
chr8 (961-1037)||(34282971-34283047)
chr8 (788-876)||(43843332-43843420)
chr8 (961-1035)||(27321924-27321998)
chr8 (965-1035)||(28928026-28928096)
chr8 (961-1037)||(38214724-38214800)
chr8 (985-1037)||(43843141-43843193)
chr8 (861-903)||(17845211-17845253)
chr8 (962-1035)||(3384106-3384179)
chr8 (962-1035)||(36406576-36406649)
[»] chr7 (24 HSPs)
chr7 (19-250)||(28427957-28428188)
chr7 (19-238)||(5483774-5483993)
chr7 (33-250)||(27915294-27915511)
chr7 (19-247)||(42470749-42470968)
chr7 (19-248)||(7605774-7605987)
chr7 (18-177)||(38838943-38839101)
chr7 (58-238)||(25759666-25759840)
chr7 (838-907)||(41862290-41862359)
chr7 (18-146)||(25213304-25213429)
chr7 (18-146)||(25216847-25216972)
chr7 (856-905)||(3012426-3012475)
chr7 (962-1035)||(35300515-35300588)
chr7 (944-1037)||(41862376-41862469)
chr7 (985-1037)||(41759718-41759770)
chr7 (962-1037)||(22206761-22206836)
chr7 (962-1037)||(22227903-22227978)
chr7 (961-1037)||(815059-815135)
chr7 (962-1037)||(5991492-5991567)
chr7 (866-976)||(3355873-3355982)
chr7 (987-1037)||(19377348-19377398)
chr7 (65-138)||(5266837-5266910)
chr7 (856-905)||(38128943-38128992)
chr7 (962-1018)||(3012282-3012338)
chr7 (988-1037)||(21932879-21932928)
[»] chr2 (29 HSPs)
chr2 (35-248)||(44215846-44216059)
chr2 (755-975)||(34756758-34756978)
chr2 (866-1033)||(42152507-42152673)
chr2 (20-237)||(42483639-42483857)
chr2 (756-975)||(15429245-15429464)
chr2 (133-250)||(39266654-39266771)
chr2 (854-1037)||(4570450-4570629)
chr2 (962-1037)||(34756645-34756720)
chr2 (961-1035)||(13203735-13203809)
chr2 (943-1037)||(16221057-16221151)
chr2 (850-907)||(12000638-12000695)
chr2 (962-1036)||(25562890-25562964)
chr2 (862-906)||(35531900-35531944)
chr2 (856-907)||(16220990-16221041)
chr2 (856-902)||(304074-304120)
chr2 (960-1037)||(15429144-15429221)
chr2 (960-1025)||(28816669-28816734)
chr2 (965-1037)||(304200-304272)
chr2 (961-1033)||(22572774-22572846)
chr2 (787-843)||(28816842-28816898)
chr2 (848-907)||(15651322-15651381)
chr2 (856-907)||(17249433-17249484)
chr2 (961-1035)||(6799959-6800033)
chr2 (885-967)||(28816757-28816838)
chr2 (961-1035)||(41114943-41115017)
chr2 (961-1036)||(18299216-18299291)
chr2 (788-854)||(43927330-43927396)
chr2 (988-1033)||(17148751-17148796)
chr2 (836-905)||(45444395-45444464)
[»] chr6 (13 HSPs)
chr6 (759-1037)||(5582441-5582706)
chr6 (18-210)||(8327371-8327563)
chr6 (963-1035)||(10397868-10397940)
chr6 (961-1035)||(34249087-34249161)
chr6 (985-1037)||(34188756-34188808)
chr6 (962-1033)||(9047002-9047073)
chr6 (844-907)||(31188283-31188346)
chr6 (963-1037)||(2960650-2960724)
chr6 (961-1035)||(23663833-23663907)
chr6 (856-905)||(2836150-2836199)
chr6 (882-975)||(11761410-11761496)
chr6 (851-907)||(31200135-31200191)
chr6 (962-1035)||(9696011-9696084)
[»] chr3 (27 HSPs)
chr3 (756-1037)||(41199775-41200040)
chr3 (809-975)||(43447628-43447794)
chr3 (943-1032)||(43700210-43700299)
chr3 (961-1029)||(47511718-47511786)
chr3 (962-1037)||(7500915-7500990)
chr3 (962-1037)||(41218458-41218533)
chr3 (882-971)||(38239529-38239618)
chr3 (961-1035)||(53651871-53651945)
chr3 (961-1034)||(44047558-44047631)
chr3 (961-1037)||(9600321-9600397)
chr3 (961-1033)||(12909795-12909867)
chr3 (756-876)||(38239607-38239727)
chr3 (962-1033)||(41358702-41358773)
chr3 (961-1035)||(25391898-25391972)
chr3 (19-87)||(26082496-26082564)
chr3 (962-1037)||(26278322-26278397)
chr3 (961-1035)||(14461038-14461112)
chr3 (961-1035)||(28311250-28311324)
chr3 (961-1035)||(44625671-44625745)
chr3 (942-975)||(4573577-4573610)
chr3 (844-905)||(33179063-33179123)
chr3 (962-1035)||(37516603-37516676)
chr3 (837-899)||(26370985-26371047)
chr3 (961-1031)||(33179198-33179268)
chr3 (873-922)||(3142994-3143043)
chr3 (837-907)||(41218298-41218372)
chr3 (960-1037)||(54846021-54846098)
[»] chr5 (32 HSPs)
chr5 (756-1037)||(39605705-39605977)
chr5 (757-1037)||(13695015-13695307)
chr5 (19-247)||(11319050-11319283)
chr5 (23-247)||(19492817-19493044)
chr5 (783-975)||(7159455-7159639)
chr5 (756-965)||(9738442-9738651)
chr5 (962-1037)||(13694800-13694875)
chr5 (961-1037)||(42989499-42989575)
chr5 (960-1023)||(7159663-7159726)
chr5 (962-1037)||(9738337-9738412)
chr5 (961-1035)||(34443933-34444007)
chr5 (943-1035)||(2476371-2476463)
chr5 (961-1037)||(15503881-15503957)
chr5 (943-1018)||(6900757-6900832)
chr5 (962-1037)||(7162159-7162234)
chr5 (962-1037)||(16667569-16667644)
chr5 (848-906)||(6900849-6900907)
chr5 (856-905)||(15504032-15504081)
chr5 (962-1035)||(17192745-17192818)
chr5 (962-1037)||(16567756-16567831)
chr5 (962-1037)||(32953743-32953818)
chr5 (961-1035)||(30248932-30249006)
chr5 (869-906)||(8214615-8214652)
chr5 (856-905)||(21069125-21069174)
chr5 (962-1035)||(33006862-33006935)
chr5 (985-1037)||(13942881-13942933)
chr5 (856-903)||(17192608-17192655)
chr5 (878-921)||(19935103-19935146)
chr5 (844-899)||(30249054-30249109)
chr5 (962-1037)||(43228718-43228793)
chr5 (837-899)||(33006996-33007058)
chr5 (962-1035)||(34846322-34846395)
[»] scaffold0108 (3 HSPs)
scaffold0108 (783-876)||(20875-20968)
scaffold0108 (960-1037)||(21073-21148)
scaffold0108 (882-971)||(20957-21046)
[»] scaffold0638 (1 HSPs)
scaffold0638 (962-1037)||(4064-4139)
[»] scaffold0075 (2 HSPs)
scaffold0075 (963-1037)||(6876-6950)
scaffold0075 (963-1035)||(11492-11563)
[»] scaffold0021 (2 HSPs)
scaffold0021 (985-1033)||(109409-109457)
scaffold0021 (856-905)||(112167-112216)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 636 - 1033
Target Start/End: Original strand, 26686191 - 26686572
Alignment:
Q  636 taaatagtcctgcaatttaacataatagtctcatatccaggttaattttcatgttattcactatcaactttgaatctaatttgaagttcacctaacaaat 735  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26686191 taaatagtcctgcaatttaacataatagtctcatatccacgttaattttcatgttattcactatcaactttgaatctaacttgaagttcacctaacaaat 26686290  T
Q  736 t-actaaagtgtaacggtcaatggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataa 834  Q
    | | ||||||||||| |||| ||||||||||||||||| |||| ||| |||||||||  ||||||||| ||||||||||||||||||||||  |||||||    
T  26686291 ttattaaagtgtaacagtcagtggcggagccaagaattctatagaacttgggcaaaaagtgcacattttatgcggataattttatagacttcccatataa 26686390  T
Q  835 tattacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaa 934  Q
    | |||||||||||||||||||||||||||||                 |||||||||||||||||||||||||   ||||||||||||||| | |||||     
T  26686391 tgttacttcttttctgcggaaaattgcacat-----------------ttcctgcggatcctaaaatcctaaggaaacaattacccacgaa-gatattac 26686472  T
Q  935 attta-ctaggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||| || |||||||||| |||||||||| |||||||||||| |||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||    
T  26686473 atttacctgggaacctaaatccttggcaaagtccgcaggaaaaacgagagattctagtaatgaccgggtttgctacaaaaaaagtagaagctgagtctgg 26686572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 756 - 1034
Target Start/End: Original strand, 33169169 - 33169429
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||||||||||  ||||||| | |  |||| ||||| ||||||||||| | ||||||||||||||||||| || |||||| ||||||| ||||||||||     
T  33169169 tggcggagccagaaattttaaagagtctggacaaaaattgcacatttccttcggataattttatagactt-tcctataatgttacttcctttctgcggat 33169267  T
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttac-taggaacctaaacc 954  Q
    ||||||||||||||||||||                 |||||| ||||||||   ||||||||||||||| ||||||| |||||| | |||||||||| |    
T  33169268 aattgcacatttcctgcgga-----------------tcctaatatcctaaggaaacaattacccacgaa-ggtattacatttacctgggaacctaaatc 33169349  T
Q  955 cttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctggg 1034  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||| ||| |||||| |||||||||||||||| ||||    
T  33169350 cttggcaaaatccgcaggaaaagcgagaggttatagtaatggttgggcttgttacaaaaaaagtagaagctgagcttggg 33169429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 23991941 - 23991745
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    |||||| || ||||||||||| ||||||||||||||| |  |||||| || ||||||| |||||| |||| ||||||| || ||||||||||||  ||||    
T  23991941 acatcaaaagtatggaaatttgatcatggctattaaaaaatttcttcatatagattgggtggttagtttaggacatactttacgtgagggtaacattgca 23991842  T
Q  118 gctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatg 214  Q
    |||||||||||| |||||||||||||| | || |||| ||||||||||||||||||||||  | ||  |||||| || ||||| ||||| |||||||    
T  23991841 gctgattttctaactaaaaagggtgctataagtgataatagccttgttattttgaatgaaatctcttatgatatggcatctgttctctttgcagatg 23991745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 886 - 1037
Target Start/End: Original strand, 16640285 - 16640436
Alignment:
Q  886 ctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttac-taggaacctaaacccttggcaaaatccgcaggaaaagcgagaga 984  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||||| |||||| | |||||||||| || ||||||||| ||||||||||||||||||    
T  16640285 ctgcggatcctaaaatcctaaggaaacaattacccacgaa-ggtattatatttacctgggaacctaaatccatggcaaaattcgcaggaaaagcgagaga 16640383  T
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||| ||||||| |||  |||||||||||||||||||| ||||| || |||||    
T  16640384 ttcttgtaatggttggtcttgctacaaagaaagtagaaactgagtctaggcta 16640436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 36036874 - 36036681
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    ||||||||| |||| |||||| |||||| |||||||| | ||||||| ||||||||||   |||| |||   |||||| ||||||||| |||||  || |    
T  36036874 acatcacaagtatgaaaatttgatcatgactattaaacaccttcttcatagagattggt--gttagttttcaacatactttgcgtgagagtaacattgta 36036777  T
Q  118 gctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagat 213  Q
    | |||||||||||||| |||| || |||| || ||||||||||||||||||||||| ||| ||| |||||||||  |||||||||||||| |||||    
T  36036776 gttgattttctagctagaaagagtactctaagtgatagtagccttgttattttgaacgaaacccttcctgatatgacctctgtcctcttaacagat 36036681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 961 - 1037
Target Start/End: Original strand, 6802174 - 6802250
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  6802174 aaaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggcta 6802250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 768 - 1033
Target Start/End: Complemental strand, 37575174 - 37574902
Alignment:
Q  768 gaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatca-------tataatattacttcttttctgcggaaaattg 860  Q
    |||||||||| | | ||| ||||| ||||||||||| |||| |||||||||||||||| |||       |||||| ||||||  ||  |||| | |||||    
T  37575174 gaattttatagagcttggacaaaaattgcacatttcctgcgtataattttatagacttctcaattcccatataatgttactttcttcatgcgtataattg 37575075  T
Q  861 cacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttgg 959  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| ||||   ||| |||| |||||| ||||||| ||||| ||   || ||||| | ||      
T  37575074 cacattttctgcggatatacctttcatgcggattctaaaatcataaggaaacagttactcacgaa-ggtattatatttacctgaaaatctaaatctttaa 37574976  T
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||| ||| |||| |||||| ||||||||||||||    |||||| |||||||||||||| |||| ||||    
T  37574975 caaaatccacagaaaaaacgagaggttctagtaatggctatacttgctataaagaaagtagaagttgagtctgg 37574902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 760 - 868
Target Start/End: Complemental strand, 11647384 - 11647276
Alignment:
Q  760 ggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaatt 859  Q
    ||||||| |||||||||| | ||||||||||| ||||||||||  |||||||||||||| ||||||  ||||| |||||||||| || || |||| ||||    
T  11647384 ggagccaggaattttatagagcctgggcaaaaattgcacattttctgcggataattttaaagacttcccatattatattacttccttcctacggataatt 11647285  T
Q  860 gcacatttc 868  Q
    |||||||||    
T  11647284 gcacatttc 11647276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 960 - 1028
Target Start/End: Complemental strand, 11647182 - 11647114
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgag 1028  Q
    |||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||| ||||    
T  11647182 caaaatccgcaggaaaagcgagaggttcttgtaatggcttggcttgctacaaagaaagtagaagttgag 11647114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 751 - 868
Target Start/End: Complemental strand, 42817825 - 42817708
Alignment:
Q  751 gtcaatggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctg 850  Q
    |||| ||||||||||| |||||||||| |  |||||||||| ||||||||||  | |||||||||||||| ||||  |||||||| ||||||| || |||    
T  42817825 gtcagtggcggagccaggaattttatagagtctgggcaaaaattgcacattttctacggataattttataaactttccatataatgttacttccttcctg 42817726  T
Q  851 cggaaaattgcacatttc 868  Q
    |  | |||||||||||||    
T  42817725 caaataattgcacatttc 42817708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 940 - 1037
Target Start/End: Complemental strand, 49898477 - 49898380
Alignment:
Q  940 ctaggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||| ||||||| ||||||||||||| ||||||||||| | |  |||||||||||||||   ||| |||||||||||| | ||||||||||||||||    
T  49898477 ctagggacctaaatccttggcaaaatctgcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggcta 49898380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 961 - 1033
Target Start/End: Original strand, 25011610 - 25011682
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||||||||||||||| | ||||||||||||    
T  25011610 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 848 - 907
Target Start/End: Original strand, 4642012 - 4642071
Alignment:
Q  848 ctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||||| |||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  4642012 ctgcggataatttcatatttcctgcggatatatctttcctgcggatcctaaaatcctaag 4642071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 960 - 1035
Target Start/End: Complemental strand, 9527087 - 9527012
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||||| | |  ||||||||||||||||| |||||||||||||||| | ||||| ||||||||    
T  9527087 caaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgggc 9527012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 849 - 907
Target Start/End: Original strand, 6802039 - 6802097
Alignment:
Q  849 tgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  6802039 tgcggataattgcacatttcctgcagatatacctttcctgaggatcctaaaatcgtaag 6802097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 25007505 - 25007431
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  25007505 aaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 25007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 27460737 - 27460663
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||| ||||||| | | ||||||||||||| |||| |||||||||||||||| | ||||||||||||||    
T  27460737 aaaatccgcaagaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 27460663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 14727358 - 14727285
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | ||||||||||||| |||  |||||||||||||||| | ||||||||||||||    
T  14727358 aaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggc 14727285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 943 - 1027
Target Start/End: Original strand, 1428436 - 1428520
Alignment:
Q  943 ggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctga 1027  Q
    |||||||||| ||||||||||||| ||||||||| | | | |||||||||||||  ||| |||||||||||||||| | ||||||    
T  1428436 ggaacctaaatccttggcaaaatctgcaggaaaaactaaaaattctagtaatggtagggcttgctacaaagaaagttggagctga 1428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 961 - 1037
Target Start/End: Original strand, 44238933 - 44239009
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||| ||||||| | |  ||||||||||||||||| || ||||||||||||| | ||||||||||||||||    
T  44238933 aaaatccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggcta 44239009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 27584087 - 27584161
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| | || |||||||||||||||| | ||| ||||||||||    
T  27584087 aaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggc 27584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 961 - 1033
Target Start/End: Original strand, 4642144 - 4642216
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||||||||||||| | |  |||||||||||||||   |||||||||||||||| | ||||||||||||    
T  4642144 aaaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctgg 4642216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 26685720 - 26685768
Alignment:
Q  371 cacaaagcagttgctatcttcatcacaagtatagcaactccaccagggc 419  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  26685720 cacaaaacagttgctatcttcatcacaagtatagcaactacacgagggc 26685768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 856 - 907
Target Start/End: Complemental strand, 49898541 - 49898490
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  49898541 aatttcacatttcctgtggatatatctttcttgcggatcctaaaatcctaag 49898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 37154064 - 37154138
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  | | || ||||||||||||| | ||||||||||||||    
T  37154064 aaaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggc 37154138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 44305453 - 44305379
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||| |  ||| || ||||||||||||| | ||||||||||||||    
T  44305453 aaaatccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggc 44305379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 8239319 - 8239246
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||| ||||||||||| | | |||||||||||||  ||| || ||||||||||||| | ||||||||||||||    
T  8239319 aaatctgcaggaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggc 8239246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 940 - 992
Target Start/End: Original strand, 3216121 - 3216173
Alignment:
Q  940 ctaggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagta 992  Q
    ||||||||||||| | ||||||||||||||||||||| |||||| || |||||    
T  3216121 ctaggaacctaaatctttggcaaaatccgcaggaaaatcgagagtttgtagta 3216173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 844 - 900
Target Start/End: Original strand, 33069932 - 33069988
Alignment:
Q  844 ttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaa 900  Q
    ||||||||||| | ||||| ||||||| | ||||||||||| |||||||||||||||    
T  33069932 ttttctgcggagacttgcatatttcctacagatataccttttctgcggatcctaaaa 33069988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 962 - 1030
Target Start/End: Original strand, 48940503 - 48940571
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcc 1030  Q
    ||||||||||||||||| | |  |||||||||||||| || ||||||||||||| || | |||||||||    
T  48940503 aaatccgcaggaaaagctaaaagttctagtaatggcttggcttgctacaaagaatgttggagctgagcc 48940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 907
Target Start/End: Complemental strand, 34459274 - 34459223
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||| |||||||||| | |||||| ||||| |||||||||||||||||||||    
T  34459274 aatttcacatttcctacagatatatctttcttgcggatcctaaaatcctaag 34459223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 781 - 827
Target Start/End: Original strand, 16640197 - 16640243
Alignment:
Q  781 cctgggcaaaacttgcacatttcatgcggataattttatagacttat 827  Q
    ||||||||||| ||||||||||  |||||||||||||||||| ||||    
T  16640197 cctgggcaaaaattgcacattttctgcggataattttatagatttat 16640243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 954 - 992
Target Start/End: Original strand, 18606087 - 18606125
Alignment:
Q  954 ccttggcaaaatccgcaggaaaagcgagagattctagta 992  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  18606087 ccttggcaaattccgcaggaaaatcgagagattctagta 18606125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 899
Target Start/End: Original strand, 31844584 - 31844646
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    ||||||| || ||||| | |||| |||||||||| |||||||| |||||||||||| ||||||    
T  31844584 ttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 31844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 964 - 1037
Target Start/End: Complemental strand, 4774045 - 4773972
Alignment:
Q  964 atccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||| | |  ||||||||||||||||| |||||||||| ||| | | || |||| ||||||||    
T  4774045 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttgagtctgggcta 4773972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 31844707 - 31844780
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||| ||||||||| | |  |||||||||||| |||| |||||| ||||||||| | || |||||||||||    
T  31844707 aaatccgtaggaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggc 31844780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 44258200 - 44257969
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  44258200 catcacaaatatggaaatttaatcatggctattaaacagcttcttcgtagagattgggtggttagtttatgacatacattgcgtgagggtaacgttgcag 44258101  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  44258100 ctgattttctagctaaaaagggtgctcttagtgatagtagccttgttattttgaatgaagcccctcctgatatagcctttgtcctcttagcaaatgcaat 44258001  T
Q  219 agatgttgagtttgttcgactctaatatgggt 250  Q
    || ||||||||||||||||| |||||||||||    
T  44258000 aggtgttgagtttgttcgaccctaatatgggt 44257969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 49608866 - 49608638
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||    
T  49608866 catcacaaatatggaaatttcatcatggctattaaacagcttcttcgtagagattgggtggttagtttacgacatacattgtgtgagggtaacgctgcag 49608767  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  49608766 ctgattttctagctaaaaagggtgctcttagtgatagttgccttgttattttgaatgaagcccctcctgatatagcctctatcctcttagcagatacaat 49608667  T
Q  219 agatgttgagtttgttcgactctaatatg 247  Q
    || ||||||||||||||||| ||| ||||    
T  49608666 aggtgttgagtttgttcgaccctagtatg 49608638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 758 - 1037
Target Start/End: Complemental strand, 6017340 - 6017082
Alignment:
Q  758 gcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaa 857  Q
    |||||||||  ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||  |||||||| |||||||                  
T  6017340 gcggagccagaaattttatagagcctgggcaaaaattgcacatttcctgcggataattttatagactttccatataatgttacttc-------------- 6017255  T
Q  858 ttgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaaccct 956  Q
            ||| |||||||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||| ||| | || |||||||||| ||     
T  6017254 -------cttcttgcggatatacctttcctacggatcctaaaatcataaggaaacaattacccacgaa-ggtattacattgacctgggaacctaaatcca 6017163  T
Q  957 tggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||| |||||||| |  |||||||||| |  ||| ||||||||||||||||||||| |||||||||||||    
T  6017162 tggcaaaatccgcagaaaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggcta 6017082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 51870814 - 51870924
Alignment:
Q  138 gggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttgttcga 237  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||    
T  51870814 gggtgcccttagtgataggagccttgttattttgaatgaagctcctcctgatatagtctttgtcctcttaacagatgcaatagatattgagtttgttcga 51870913  T
Q  238 ctctaatatgg 248  Q
    ||||| |||||    
T  51870914 ctctagtatgg 51870924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 45681512 - 45681596
Alignment:
Q  154 agtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttgttcgac 238  Q
    |||||||||| ||||||||||||| |||||| |||||||| ||| |||||||||||||||||||||| |||| ||||||||||||    
T  45681512 agtagccttgctattttgaatgaaacccctcttgatatagtctccgtcctcttagcagatgcaataggtgttaagtttgttcgac 45681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 756 - 876
Target Start/End: Original strand, 15034361 - 15034481
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||||||||||  |||| |||| | ||||||||||| ||||||||||  |||||| ||||| ||||||||  ||| |||| ||||||| || ||| |||     
T  15034361 tggcggagccagaaattatatagagcctgggcaaaaattgcacattttttgcggaaaatttgatagacttcccatgtaatgttacttccttcctgtggat 15034460  T
Q  856 aattgcacatttcctgcggat 876  Q
    |||||||||||||||||||||    
T  15034461 aattgcacatttcctgcggat 15034481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 882 - 1037
Target Start/End: Original strand, 15034470 - 15034623
Alignment:
Q  882 tttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaacccttggcaaaatccgcaggaaaagcgag 981  Q
    ||||||||||||||||||||| ||||   ||||||||||||||| | |||  | ||  || |||||||||| || ||| ||| || |||||||||||||     
T  15034470 tttcctgcggatcctaaaatcttaaggaaacaattacccacgaa-gatatacatttgcctgggaacctaaatccatggtaaa-tctgcaggaaaagcgaa 15034567  T
Q  982 agattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |  |||||||||||| |||| ||| |||||||||||| |||||||||| |||||||    
T  15034568 aagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggcta 15034623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 7261099 - 7260927
Alignment:
Q  20 atcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagc 119  Q
    ||||||| |||| |||||| ||||||  ||||||| | ||| |||||| | ||| | | |||| |||| ||||||  ||| || ||||||||| |||| |    
T  7261099 atcacaagtatgaaaatttgatcatgattattaaacatctttttcgtaaaaattaggtagttagtttacgacatattttgagtcagggtaacgttgcaac 7261000  T
Q  120 tgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatg-aagcccctcctgatat 191  Q
    ||||||||||||||||||| ||||||| |  || | || ||||||||||||||| | || |||||||||||||    
T  7260999 tgattttctagctaaaaagagtgctctaactgacattaaccttgttattttgaaagaaaccccctcctgatat 7260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 962 - 1025
Target Start/End: Original strand, 31929118 - 31929181
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagct 1025  Q
    |||||||||||||||||||| |||||||||||||  |||| ||||||||||||||||| |||||    
T  31929118 aaatccgcaggaaaagcgagggattctagtaatgattgggcttgctacaaagaaagtaaaagct 31929181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 964 - 1035
Target Start/End: Complemental strand, 50383927 - 50383856
Alignment:
Q  964 atccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||| | |  ||||||||||||||||| |||||||||||||||| | ||||||||||||||    
T  50383927 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggc 50383856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 1585751 - 1585677
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||| ||||||||||| | | |||||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  1585751 aaaatctgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggc 1585677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 866 - 975
Target Start/End: Original strand, 31928971 - 31929080
Alignment:
Q  866 ttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttggcaaaa 964  Q
    |||| ||||||||||||||||||| ||||||||||||||||    |||||||||| |||| |||||||  |||| || |||||||||| |||||||||||    
T  31928971 ttcccgcggatatacctttcctgcagatcctaaaatcctaacgaaacaattacccgcgaa-ggtattacgtttacctgggaacctaaatccttggcaaaa 31929069  T
Q  965 tccgcaggaaa 975  Q
    |  ||||||||    
T  31929070 tttgcaggaaa 31929080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 4552226 - 4552153
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  4552226 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 4552153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 866 - 938
Target Start/End: Complemental strand, 41955430 - 41955359
Alignment:
Q  866 ttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattt 938  Q
    |||||||||||||||||||| || ||||||||||||||||||   ||||||||||||||| ||||||| ||||    
T  41955430 ttcctgcggatatacctttcttgtggatcctaaaatcctaagaaaacaattacccacgaa-ggtattacattt 41955359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 32005956 - 32005882
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||| ||||||  ||| |||||||||||||||| | ||||||||||||||    
T  32005956 aaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggc 32005882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 46645632 - 46645559
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||| |||||| | | ||||||||||||| |||| ||||||||||| |||| | ||||||||||||||    
T  46645632 aaatccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgagcctgggc 46645559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 848 - 907
Target Start/End: Original strand, 2521873 - 2521932
Alignment:
Q  848 ctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||||| |||  ||||||| ||||||||||  |||||||||||||||||||||||||||    
T  2521873 ctgcggataatatcacattttctgcggatatgtctttcctgcggatcctaaaatcctaag 2521932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 10715697 - 10715622
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgc-tacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||| |||||||||||| | ||| ||||||||||    
T  10715697 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10715622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 10929467 - 10929392
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgc-tacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||| |||||||||||| | ||| ||||||||||    
T  10929467 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10929392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 961 - 1032
Target Start/End: Complemental strand, 40969266 - 40969195
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctg 1032  Q
    |||||||||||||||||| | | |||||  |||||| |||  |||||||||||||||| |||||||||||||    
T  40969266 aaaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagcctg 40969195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 2017511 - 2017585
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  | | |||||||||||||||| | |||| |||||||||    
T  2017511 aaaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggc 2017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 837 - 907
Target Start/End: Complemental strand, 25237761 - 25237691
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||||| || ||||| | |||| ||||||||||||||||| | |||||||||| ||||||||||| ||||    
T  25237761 ttacttccttcctgcgaataatttcacatttcctgcggatacatctttcctgcgaatcctaaaatcataag 25237691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1031
Target Start/End: Original strand, 41972511 - 41972581
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcct 1031  Q
    |||||||||||||||||| | |  |||||||||||| | || |||||||||||||||| | ||||||||||    
T  41972511 aaaatccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcct 41972581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 2576200 - 2576127
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||| ||||| |||||| | | ||||| ||||||| |||| |||||||||||||||| | ||||||||||||||    
T  2576200 aaattcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 2576127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 4728587 - 4728514
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | ||||||||||||| | || |||||||||||||||| | ||| ||| ||||||    
T  4728587 aaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctgggc 4728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 958 - 1037
Target Start/End: Complemental strand, 32828260 - 32828181
Alignment:
Q  958 ggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||  ||||||||||| | |  |||||||||||| |||| || ||||||||||| | | ||||||||||||||||    
T  32828260 ggcaaaatatgcaggaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggcta 32828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 844 - 899
Target Start/End: Complemental strand, 40969369 - 40969314
Alignment:
Q  844 ttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    |||||||| || |||| |||||||||| |||||||| |||||||||||| ||||||    
T  40969369 ttttctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 40969314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 845 - 907
Target Start/End: Complemental strand, 8901979 - 8901917
Alignment:
Q  845 tttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||||||| | |||| ||||||| |||||||| || |||||| | ||||||||||||||||||    
T  8901979 tttctgcgaataatttcacatttactgcggatgtatctttcccgtggatcctaaaatcctaag 8901917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 10058689 - 10058627
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    ||||||| || ||||| | |||| |||||||||| |||||||| |||||||||||| ||||||    
T  10058689 ttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 10058627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 31364177 - 31364103
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||| | | |  |||||||||||| |||  |||||||||||||||| | ||| ||||||||||    
T  31364177 aaaatccgcaggaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggc 31364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 781 - 843
Target Start/End: Original strand, 31928907 - 31928969
Alignment:
Q  781 cctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttc 843  Q
    ||||| ||||| |||||||||||||||| ||||||||||| ||||  |||| ||| |||||||    
T  31928907 cctggacaaaaattgcacatttcatgcgaataattttatatacttcccatacaatgttacttc 31928969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 804 - 854
Target Start/End: Complemental strand, 41955471 - 41955421
Alignment:
Q  804 atgcggataattttatagacttatcatataatattacttcttttctgcgga 854  Q
    |||||||||||||||||||||| ||||||||| || |||| || |||||||    
T  41955471 atgcggataattttatagacttctcatataatgttgcttccttcctgcgga 41955421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 907
Target Start/End: Complemental strand, 4651226 - 4651177
Alignment:
Q  858 ttgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||| ||||||||||||||  ||||||||||||||| ||||||| ||||    
T  4651226 ttgcatatttcctgcggatactcctttcctgcggatcttaaaatcttaag 4651177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 992 - 1037
Target Start/End: Complemental strand, 8901814 - 8901769
Alignment:
Q  992 aatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||| || ||||||||||||| | ||||||||||||||||    
T  8901814 aatggctgggctttctacaaagaaagttggagctgagcctgggcta 8901769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 6930926 - 6930695
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||||||    
T  6930926 catcacaaatatggaaatttaatcatggctattaaacaacttcttcgtagagattgggtggttagtttacgacatacattgcgtgagggtaatgctgcag 6930827  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6930826 ctgattttctagctaaaaagggtgctcttagtgatagtagccttgttattttgaatgaagcccctcatgatatagcctctgtcctcttagcagatgcaat 6930727  T
Q  219 agatgttgagtttgttcgactctaatatgggt 250  Q
    || ||||||||||||||||| ||| |||||||    
T  6930726 aggtgttgagtttgttcgaccctagtatgggt 6930695  T

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Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 44723493 - 44723724
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||| |||||| |||| |||||||||| ||||||||||||| || ||    
T  44723493 catcacaaatatgaaaatttaatcattgctattaaacaccttcttcgtagagattgggtggttagtttacgacatacatttcgtgagggtaacgttgtag 44723592  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
     |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||    
T  44723593 ttgattttctagctaaagaaggtgctcttagtgatagtagccttgttattttgaatgaagcccctcctaatataacttctgtcctcttagcagatgcaat 44723692  T
Q  219 agatgttgagtttgttcgactctaatatgggt 250  Q
    || ||||||||||||| ||| ||| |||||||    
T  44723693 aggtgttgagtttgtttgaccctagtatgggt 44723724  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 27226295 - 27226467
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||| |||||| ||||| |||||||| |  || |||||||||||||  |||||| |||||||||||| || | |||||||||| ||||||    
T  27226295 catcacaaatatgggaatttagtcatgactattaaacacattattcgtagagattgtgtggttagtttatgacatactttacatgagggtaacactgcag 27226394  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatat 191  Q
    || ||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  27226395 ctaattttctagctaagaagggggctcttagtgatagtagctttgttattttgaatcaagcccctcctgatat 27226467  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 756 - 975
Target Start/End: Original strand, 21137889 - 21138107
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    ||||||||||| |||||||||| |  || || |||| ||||||||||  ||| ||||| |||||||||||  |||||||| ||||||| ||  || |||     
T  21137889 tggcggagccatgaattttatagagtctaggtaaaaattgcacattttctgcagataactttatagacttcccatataatgttacttccttcatgtggat 21137988  T
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacc 954  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||| ||||   ||||||||||||||| ||||||| ||||| || |||||||||| |    
T  21137989 aattgcacatttcctac-gatatacctttcctgcgaatcctaaaatcataaggaaacaattacccacgaa-ggtattacatttacctgggaacctaaatc 21138086  T
Q  955 cttggcaaaatccgcaggaaa 975  Q
    ||||||||||| |||||||||    
T  21138087 cttggcaaaattcgcaggaaa 21138107  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 962 - 1033
Target Start/End: Original strand, 21138133 - 21138204
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||||||||||||||| |||| |||||||||||| | || |||||||||||||||||||||||||||||||    
T  21138133 aaatccgcaggaaaagcaagaggttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctgg 21138204  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 768 - 876
Target Start/End: Complemental strand, 12478363 - 12478256
Alignment:
Q  768 gaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaattgcacattt 867  Q
    |||||||||| | |||| |||||| ||||||||||| ||| |||||||||||||||||  ||||||||  |||||| || |||| || ||||||||||||    
T  12478363 gaattttatagagcctgcgcaaaa-ttgcacatttcctgcagataattttatagacttcccatataatggtacttccttcctgcagataattgcacattt 12478265  T
Q  868 cctgcggat 876  Q
    |||||||||    
T  12478264 cctgcggat 12478256  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 756 - 870
Target Start/End: Complemental strand, 8968605 - 8968491
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    ||||||||| | |||||||||| | ||| ||||||| ||||||||||| ||| ||||||||| |||||||   ||||||| ||||||| || ||| |||     
T  8968605 tggcggagctaggaattttatagagcctaggcaaaaattgcacatttcctgctgataattttgtagacttcctatataatgttacttccttcctgtggat 8968506  T
Q  856 aattgcacatttcct 870  Q
    |||||||||||||||    
T  8968505 aattgcacatttcct 8968491  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 8968370 - 8968295
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||| ||||| || || ||||||||||||||||  ||||||||||| |||||||||||||| ||||||||    
T  8968370 aaatccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagtagaagctgagtctgggcta 8968295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 882 - 1037
Target Start/End: Complemental strand, 12478267 - 12478100
Alignment:
Q  882 tttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttggcaaaat------------ccg 968  Q
    ||||||||||||||||||||||||||   ||||||||||||||| | ||||| ||||| || |||||| ||| ||||||||||||            |||    
T  12478267 tttcctgcggatcctaaaatcctaaggaaacaattacccacgaa-gatattacatttacctgggaaccaaaatccttggcaaaattcgcaggtaaacccg 12478169  T
Q  969 caggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| ||||| |||||| ||| | |||  ||||||||||||||||||||| ||| |||||||||    
T  12478168 caggaaaagagagaggttctagcaatagatggacttgctacaaagaaagtagaagttgatcctgggcta 12478100  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 24965074 - 24965000
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||||||||||||||| | ||| ||||||||||    
T  24965074 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggc 24965000  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 961 - 1037
Target Start/End: Original strand, 34282971 - 34283047
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||| ||||||| | |  ||||||||||| ||||  |||||||||||||||| | ||||||||||||||||    
T  34282971 aaaatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggcta 34283047  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 788 - 876
Target Start/End: Complemental strand, 43843420 - 43843332
Alignment:
Q  788 aaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaattgcacatttcctgcggat 876  Q
    |||| ||||||||||  ||  |||||||||||||| || ||||||||  ||| ||| |||||||| | |||||||||||||||||||||    
T  43843420 aaaaattgcacattttttgttgataattttatagatttctcatataacgttaattcatttctgcgaataattgcacatttcctgcggat 43843332  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 27321924 - 27321998
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||| | | |  || |||||||||||||| |||||||||||||| | | ||||||||||||||    
T  27321924 aaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggc 27321998  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 965 - 1035
Target Start/End: Complemental strand, 28928096 - 28928026
Alignment:
Q  965 tccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||| | | ||||||||||||| | || |||||||||||||||| | ||| ||||||||||    
T  28928096 tccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctgggc 28928026  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 961 - 1037
Target Start/End: Complemental strand, 38214800 - 38214724
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||||| | |  |||||||| |||||||  |||||||||||||| | | ||||||||| ||||||    
T  38214800 aaaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggcta 38214724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 985 - 1037
Target Start/End: Complemental strand, 43843193 - 43843141
Alignment:
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||   ||||||||||||||||||||| |||||| ||||||    
T  43843193 ttctagtaatggctgaccttgctacaaagaaagtagaagttgagcccgggcta 43843141  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 861 - 903
Target Start/End: Complemental strand, 17845253 - 17845211
Alignment:
Q  861 cacatttcctgcggatatacctttcctgcggatcctaaaatcc 903  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||    
T  17845253 cacattttctgcggatatacctttcttgcggatcctaagatcc 17845211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 3384106 - 3384179
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||| |||||| | | |||||| ||||||  ||  |||||||||||||||| | ||||||||||||||    
T  3384106 aaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggc 3384179  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 36406576 - 36406649
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||| |||||||||| | | ||| ||||||||  |||| |||||||||||||||| | ||| ||||||||||    
T  36406576 aaatccacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctgggc 36406649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 5e-99; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 28427957 - 28428188
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  28427957 catcacaaatatgaaaatttaatcatggctattaaacagcttcttcgtagagattggatggttagtttacgacatacattgcgtgagggtaacactgcag 28428056  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28428057 ttgattttctagctaaaaagggtgctcttagtgatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcttcttagcagatgcaat 28428156  T
Q  219 agatgttgagtttgttcgactctaatatgggt 250  Q
    || |||||||||||||| || ||| |||||||    
T  28428157 aggtgttgagtttgttcaaccctagtatgggt 28428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 5483993 - 5483774
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||    
T  5483993 catcacaaatatggaaatttaatcatggctattaaaaaacttcttcgtagagattgggtggttagtttacgacatacattgtgtgagggtaacgctgcag 5483894  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  5483893 ctgattttctagctaaaaagggtgctcttagtgatactagccttgttattttgaatgaagcccctcctgatatagcctttgtcctcttagcagatgcagt 5483794  T
Q  219 agatgttgagtttgttcgac 238  Q
    || |||| ||||||||||||    
T  5483793 aggtgttaagtttgttcgac 5483774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 27915511 - 27915294
Alignment:
Q  33 aaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagctgattttctagct 132  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  27915511 aaatttaatcatgactattaaagagcttcttcgtagagattggatggttagtttacgacatacattgcgtgagggtaacgctgcagctgattttctagtt 27915412  T
Q  133 aaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttg 232  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||||||||    
T  27915411 aaaaagggtgctctcagtgatagtagccttgttattttgaatgaagcccctcctgatatggcatgtgtcctcttagcagctgcaataggtgttgagtttg 27915312  T
Q  233 ttcgactctaatatgggt 250  Q
    |||||| ||| |||||||    
T  27915311 ttcgaccctagtatgggt 27915294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 42470749 - 42470968
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||     
T  42470749 catcataaatatggaaatttaatcatggctattaaacagcttcttcgtagagattgggtggttagtttacgacatacattgcgtgagggtaacgctacaa 42470848  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    |||||||||||         | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42470849 ctgattttcta---------gttgctcttagtgatagtacccttgctattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 42470939  T
Q  219 agatgttgagtttgttcgactctaatatg 247  Q
    || ||||||||||||||||| ||| ||||    
T  42470940 aggtgttgagtttgttcgaccctagtatg 42470968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 7605774 - 7605987
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcag 118  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||  |||||||||| |||||||||||| |||||    
T  7605774 catcacaaatatggaaatttaatcatggctgttaaacagcttctttgtagagattgggtggttagtttacaacatacattgtgtgagggtaacgttgcag 7605873  T
Q  119 ctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    ||||||||||||||||||||||      |||          |||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  7605874 ctgattttctagctaaaaaggg------tag----------cttgttattttgaatgaagctcctccagatatagtctctgtcctcttaacagatgcaat 7605957  T
Q  219 agatgttgagtttgttcgactctaatatgg 248  Q
    || ||||||||||||||||| |||||||||    
T  7605958 aggtgttgagtttgttcgaccctaatatgg 7605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 38839101 - 38838943
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    |||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||| ||||||| ||| ||||||| |||||| ||||||||| ||||    
T  38839101 acatcacaaatatgaaaatttgatcatggctattaaacaccttcttcgtagagattgg-tggttaaattacgacatactttgcgtaagggtaacgttgca 38839003  T
Q  118 gctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaa 177  Q
     | |||||||| |||||||||| || ||| || |||||||||||||||||||||||||||    
T  38839002 acagattttcttgctaaaaaggatgttctaagtgatagtagccttgttattttgaatgaa 38838943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 25759840 - 25759666
Alignment:
Q  58 cttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagctgattttctagctaaaaagggtgctcttagggatagta 157  Q
    ||||||| |||||||||| |||||| |||| |||||||  |||||||||||||| ||||||||| |||||||||||||||| ||| ||  |  |||||||    
T  25759840 cttcttcatagagattgggtggttagtttacgacatactctgcgtgagggtaacactgcagctggttttctagctaaaaagagtgttccaattgatagta 25759741  T
Q  158 gccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttgttcgac 238  Q
    |||||||||| |||||||||  ||      |||| ||||||||| ||||||||||||| |||  |||||||||||||||||    
T  25759740 gccttgttatattgaatgaaatcc------atatggcctctgtcttcttagcagatgccataagtgttgagtttgttcgac 25759666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 838 - 907
Target Start/End: Original strand, 41862290 - 41862359
Alignment:
Q  838 tacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  41862290 tacttcatttctgcggataattatacatttcctgcggatatacctttcctgtggatcctaaaatcctaag 41862359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 25213304 - 25213429
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    |||||| || |||| |||||| |||||| |||||||| | ||||   ||||||||||  |||||| |||| ||||||| ||||||||| |||||||| ||    
T  25213304 acatcataagtatgaaaattttatcatgactattaaacaccttc---gtagagattgagtggttagtttacgacatacgttgcgtgagagtaacgctaca 25213400  T
Q  118 gctgattttctagctaaaaagggtgctct 146  Q
    ||||||||  ||||||||||| |||||||    
T  25213401 gctgatttcttagctaaaaagagtgctct 25213429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 25216847 - 25216972
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    |||||| || |||| |||||| |||||| |||||||| | ||||   ||||||||||  |||||| |||| ||||||| ||||||||| |||||||| ||    
T  25216847 acatcataagtatgaaaattttatcatgactattaaacaccttc---gtagagattgagtggttagtttacgacatacgttgcgtgagagtaacgctaca 25216943  T
Q  118 gctgattttctagctaaaaagggtgctct 146  Q
    ||||||||  ||||||||||| |||||||    
T  25216944 gctgatttcttagctaaaaagagtgctct 25216972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 856 - 905
Target Start/End: Complemental strand, 3012475 - 3012426
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  3012475 aatttcacatttcctgcggatatatctttcctgcggatcctaaaatccta 3012426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 35300515 - 35300588
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  35300515 aaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 35300588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 944 - 1037
Target Start/End: Original strand, 41862376 - 41862469
Alignment:
Q  944 gaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| ||||||||||||||| || |||| | |||||| |||||||||||||   ||||| |||||||||||| |||||||  |||||||    
T  41862376 gaacctaaatccttggcaaaatccgtagaaaaaacaagagatactagtaatggctgaatttgctgcaaagaaagtaggagctgagtatgggcta 41862469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 985 - 1037
Target Start/End: Original strand, 41759718 - 41759770
Alignment:
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||||||||    
T  41759718 ttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggcta 41759770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 22206761 - 22206836
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | | ||| |||||||| ||||| |||||||||||||| | | ||||||||||||||||    
T  22206761 aaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggcta 22206836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 22227978 - 22227903
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | | ||| |||||||| ||||| |||||||||||||| | | ||||||||||||||||    
T  22227978 aaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggcta 22227903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 961 - 1037
Target Start/End: Original strand, 815059 - 815135
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||| ||||||||| | |  |||||||||||||| |  |||||||||||||||| | ||||||||||||||||    
T  815059 aaaatccgtaggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggcta 815135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 5991492 - 5991567
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||| | | |  ||||||||||||||||| |||||||||||||| | | || |||||||||||||    
T  5991492 aaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggcta 5991567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 866 - 976
Target Start/End: Complemental strand, 3355982 - 3355873
Alignment:
Q  866 ttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaacccttggcaaaat 965  Q
    |||||||||||  |||||||||||||||||||||||||||||   ||||||||| || || ||||||  |||  |||||||    ||  |||||||||||    
T  3355982 ttcctgcggatgcacctttcctgcggatcctaaaatcctaaggaaacaattacctac-aaaggtattgtattacctaggaatgctaattcttggcaaaat 3355884  T
Q  966 ccgcaggaaaa 976  Q
    |||||||||||    
T  3355883 ccgcaggaaaa 3355873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 987 - 1037
Target Start/End: Complemental strand, 19377398 - 19377348
Alignment:
Q  987 ctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||| |||| |||||||||||| | ||||||||||||||||    
T  19377398 ctagtaatggctggagttgttacaaagaaagttggagctgagcctgggcta 19377348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 5266837 - 5266910
Alignment:
Q  65 gtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagctgattttctagctaaaaag 138  Q
    ||||||||||||||||| ||||| ||||||| |||| | | |||||||||  | ||||||| ||||||||||||    
T  5266837 gtagagattggatggttgatttacgacatactttgcattacggtaacgctataactgatttcctagctaaaaag 5266910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 856 - 905
Target Start/End: Original strand, 38128943 - 38128992
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| ||||||||||||  ||||| |||||||||||||||||||||||||    
T  38128943 aatttcacatttcctgcacatatatctttcctgcggatcctaaaatccta 38128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 962 - 1018
Target Start/End: Complemental strand, 3012338 - 3012282
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagt 1018  Q
    ||||||||||||||||| | |  |||||||||||| |||| ||||||||||||||||    
T  3012338 aaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagt 3012282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 988 - 1037
Target Start/End: Original strand, 21932879 - 21932928
Alignment:
Q  988 tagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| |||| |||||||||||||||| | || |||||||||||||    
T  21932879 tagtaatggttgggcttgctacaaagaaagttggagttgagcctgggcta 21932928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 8e-67; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 44215846 - 44216059
Alignment:
Q  35 atttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagctgattttctagctaa 134  Q
    |||||||||||||||||||| | |||||||||||||| | | |||||| |||| ||||||| ||| ||||||||||||||||| |||||||| ||||||     
T  44215846 atttaatcatggctattaaacaccttcttcgtagagagtaggtggttagtttacgacatactttgtgtgagggtaacgctgcaactgattttttagctag 44215945  T
Q  135 aaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttgtt 234  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || | |||||||||| ||    
T  44215946 aaagggtgctcttagtgatagtagccttgttattttgaatgaaacccctcctgatatggcctctgtcctcttagcagatgccatgggtgttgagtttatt 44216045  T
Q  235 cgactctaatatgg 248  Q
    |||| ||| |||||    
T  44216046 cgaccctagtatgg 44216059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 755 - 975
Target Start/End: Complemental strand, 34756978 - 34756758
Alignment:
Q  755 atggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcgga 854  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||||| | | |||||||||||||||||   ||||||| ||||||| || |||||||    
T  34756978 atggcggagccaagaattttatagagcctgggcaaaaattgcacatttcctaccgataattttatagacttcctatataatgttacttccttcctgcgga 34756879  T
Q  855 aaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaac 953  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| ||||| || ||||||||||     
T  34756878 taattgtacatttcctgcggatatacctttcctgcggatcctaaaatcctaaggaaacaattacccacgaa-ggtattacatttacctgggaacctaaat 34756780  T
Q  954 ccttggcaaaatccgcaggaaa 975  Q
    |||||||||||||| |||||||    
T  34756779 ccttggcaaaatccacaggaaa 34756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 866 - 1033
Target Start/End: Original strand, 42152507 - 42152673
Alignment:
Q  866 ttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaacccttggcaaaat 965  Q
    |||||||| ||||| ||||||| |||||||||||||||||||   ||||||||||||||| | ||||| ||||||| || ||||||| ||||||||||||    
T  42152507 ttcctgcgaatatatctttcctacggatcctaaaatcctaaggaaacaattacccacgaa-gatattacatttacttgggacctaaatccttggcaaaat 42152605  T
Q  966 ccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||| |||||    
T  42152606 ccgcaggaaaagcgagaggttctaataatggctggatttgctacaaagaaagtagaagctgaacctgg 42152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 42483857 - 42483639
Alignment:
Q  20 atcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgcagc 119  Q
    ||||||| ||||||||||| ||||||| ||||||| |  |||||| |||||||| | |||||||||||  ||||| | ||| |||||| |||  || |||    
T  42483857 atcacaagtatggaaatttgatcatggttattaaacattttcttcatagagatttggtggttaatttacaacatataatgcatgagggcaacattgtagc 42483758  T
Q  120 tgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaag-cccctcctgatatagcctctgtcctcttagcagatgcaat 218  Q
    |||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||  ||    
T  42483757 tgattttctagctaaaaaaggtgctctaagtgatagtagtcttgttattttgaatgaagccccctcctaatatggcctctatcctcttagcagatgagat 42483658  T
Q  219 agatgttgagtttgttcga 237  Q
     | ||||||||||||||||    
T  42483657 gggtgttgagtttgttcga 42483639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 756 - 975
Target Start/End: Complemental strand, 15429464 - 15429245
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||||||||||||||||||||| | | ||| ||||| ||||||||||  |||||||||||||||||||||   ||||||| ||||||| || |||| ||     
T  15429464 tggcggagccaagaattttatagagcttggacaaaaattgcacattttctgcggataattttatagacttcctatataatgttacttccttcctgccgat 15429365  T
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattt-actaggaacctaaacc 954  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||| ||||   ||||||||||| ||| ||||||| |||| |||  ||||||||| |    
T  15429364 aattgcacatttcctgcggatatacctttcctgtggatattaaaatcttaaggaaacaattacccatgaa-ggtattacatttaactgagaacctaaatc 15429266  T
Q  955 cttggcaaaatccgcaggaaa 975  Q
    |||| |||||||| |||||||    
T  15429265 cttgacaaaatccacaggaaa 15429245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 39266771 - 39266654
Alignment:
Q  133 aaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaatagatgttgagtttg 232  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  39266771 aaaaagggtgcttttagtgatagtagccttgttattttgaatgaagccccttctgatatggcctctatcctcttagcagatgcaatagatgttgaatttg 39266672  T
Q  233 ttcgactctaatatgggt 250  Q
    |||||| ||| |||||||    
T  39266671 ttcgaccctagtatgggt 39266654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 854 - 1037
Target Start/End: Original strand, 4570450 - 4570629
Alignment:
Q  854 aaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaac 953  Q
    |||||||||||||| |||| |||||| |||| ||| ||||||||||||| ||||   ||||||||| ||||| ||||||| ||||||   ||| |||||     
T  4570450 aaaattgcacattttctgcagatatatcttttctgtggatcctaaaatcttaaggaaacaattacctacgaa-ggtattacatttac---gaatctaaat 4570545  T
Q  954 ccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||| |||||||||||||| ||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  4570546 ccttagcaaaatccgcaggtaaagcgaaagtttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggcta 4570629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 34756720 - 34756645
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||| ||||| ||||||||| ||| ||  |||||||||||||||||||||||||||||||||||    
T  34756720 aaatccgcaggaaaagtgagaggttctagtaacggccggacttgctacaaagaaagtagaagctgagcctgggcta 34756645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 13203809 - 13203735
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||||||||||||||| | ||||||||||||||    
T  13203809 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 13203735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 943 - 1037
Target Start/End: Original strand, 16221057 - 16221151
Alignment:
Q  943 ggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||| |||| |||| |||||||||||||||||||| |||  |||||||||||| || | ||| |||| ||||||||||| ||||||||||||||    
T  16221057 ggaacttaaatccttagcaaaatccgcaggaaaagcaagaagttctagtaatggttgtgcttgttacacagaaagtagaacctgagcctgggcta 16221151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 850 - 907
Target Start/End: Complemental strand, 12000695 - 12000638
Alignment:
Q  850 gcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  12000695 gcggataatttcacatttcctgcggatatatctttcctgcggatcctaaaatcctaag 12000638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 962 - 1036
Target Start/End: Complemental strand, 25562964 - 25562890
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggct 1036  Q
    ||||||||||||||||| | |  |||||||||||| |||| |||||||||||||||| | |||||||||||||||    
T  25562964 aaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggct 25562890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 862 - 906
Target Start/End: Complemental strand, 35531944 - 35531900
Alignment:
Q  862 acatttcctgcggatatacctttcctgcggatcctaaaatcctaa 906  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  35531944 acatttcctgcggatataactttcctgcggatcctaaaatcctaa 35531900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 856 - 907
Target Start/End: Original strand, 16220990 - 16221041
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  16220990 aattgcacattttctgtggatatacctttcctgcagatcctaaaatcctaag 16221041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 856 - 902
Target Start/End: Original strand, 304074 - 304120
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatc 902  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  304074 aatttcacatttcctgcggatatatctttcctgcggatcctaaaatc 304120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 960 - 1037
Target Start/End: Complemental strand, 15429221 - 15429144
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| || ||||||||||| |||||||||||    |  |||||||||||||||||||||||||||||| ||||    
T  15429221 caaaatccgaagaaaaagcgagaggttctagtaatgatcagacttgctacaaagaaagtagaagctgagcctgagcta 15429144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 960 - 1025
Target Start/End: Complemental strand, 28816734 - 28816669
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagct 1025  Q
    |||||||||||| |||||| |||| ||||| ||||||||||  ||||||||||| |||||||||||    
T  28816734 caaaatccgcagaaaaagcaagaggttctaataatggctggacttgctacaaagtaagtagaagct 28816669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 965 - 1037
Target Start/End: Original strand, 304200 - 304272
Alignment:
Q  965 tccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||| | |  ||||||||||||||| | |||||||||||||||| | |||||||| |||||||    
T  304200 tccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggcta 304272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 961 - 1033
Target Start/End: Original strand, 22572774 - 22572846
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||| |||||||||||| | | ||||||||||||| | || |||||||||||||||| | ||||||||||||    
T  22572774 aaaattcgcaggaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttggagctgagcctgg 22572846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 28816898 - 28816842
Alignment:
Q  787 caaaacttgcacatttcatgcggataattttatagacttatcatataatattacttc 843  Q
    ||||| ||||||||||| |||||||||||||||||||||  |||||||| |||||||    
T  28816898 caaaaattgcacatttcttgcggataattttatagacttcccatataatgttacttc 28816842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 848 - 907
Target Start/End: Complemental strand, 15651381 - 15651322
Alignment:
Q  848 ctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    ||||||| |||| ||||||||||| ||||||| ||||||| | |||||||||||||||||    
T  15651381 ctgcggataatttcacatttcctggggatatatctttcctactgatcctaaaatcctaag 15651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 856 - 907
Target Start/End: Complemental strand, 17249484 - 17249433
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||| ||||||||||||||||||| ||||  |||||||||||||||||||||    
T  17249484 aatttcacatttcctgcggatatatctttaatgcggatcctaaaatcctaag 17249433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 6799959 - 6800033
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||  | | ||||||||||||| || | |||||||||||||||| | ||| ||||||||||    
T  6799959 aaaatccgcaggaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 6800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 885 - 967
Target Start/End: Complemental strand, 28816838 - 28816757
Alignment:
Q  885 cctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaacccttggcaaaatcc 967  Q
    |||||||||||||||||||||||   ||||||| ||||||| | ||||| ||||||  | |||||||| ||||||||||||||    
T  28816838 cctgcggatcctaaaatcctaaggaaacaattatccacgaa-gctattacatttacctgaaacctaaatccttggcaaaatcc 28816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 41114943 - 41115017
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||| | | | ||||||||||||| || | |||||||||||||||| | ||| ||||||||||    
T  41114943 aaaatccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 41115017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 961 - 1036
Target Start/End: Original strand, 18299216 - 18299291
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggct 1036  Q
    |||||||||| ||||||  | | ||||||||||||| |||| |||||||||||||||| | || |||||| |||||    
T  18299216 aaaatccgcaagaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttggaggtgagcccgggct 18299291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 788 - 854
Target Start/End: Complemental strand, 43927396 - 43927330
Alignment:
Q  788 aaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcgga 854  Q
    |||| ||||| ||||  |||||||||||||||| ||||  |||||||||||||||| || |||||||    
T  43927396 aaaaattgcatattttttgcggataattttataaacttcccatataatattacttccttcctgcgga 43927330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 988 - 1033
Target Start/End: Complemental strand, 17148796 - 17148751
Alignment:
Q  988 tagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||||||| | |||||||||||||||| | ||||||||||||    
T  17148796 tagtaatggctgagcttgctacaaagaaagttggagctgagcctgg 17148751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 836 - 905
Target Start/End: Original strand, 45444395 - 45444464
Alignment:
Q  836 attacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||||||| || ||||| | |||| |||||||||||  |||||| ||||| ||| |||||||||||||||    
T  45444395 attacttccttcctgcgaataatttcacatttcctgtagatatatctttcttgcagatcctaaaatccta 45444464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 4e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 759 - 1037
Target Start/End: Complemental strand, 5582706 - 5582441
Alignment:
Q  759 cggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaat 858  Q
    |||||||| |||||||||| | ||||||||||| |||||||||| |||| |||||||||| ||||||  |||||||| ||||||| ||  |||||| |||    
T  5582706 cggagccatgaattttatagagcctgggcaaaaattgcacattttatgcagataattttacagacttcccatataatgttacttccttcatgcggataat 5582607  T
Q  859 tgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaaccctt 957  Q
    ||||||| ||             |||||  |||||||||||||||||||   | ||||||||||||| | ||||  ||||| || |||||||||| || |    
T  5582606 tgcacatatc-------------tttcccacggatcctaaaatcctaaggaaataattacccacgaa-gatattgcatttatctgggaacctaaatccct 5582521  T
Q  958 ggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||| |||||||||||||    
T  5582520 ggcaaaatccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggcta 5582441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 8327371 - 8327563
Alignment:
Q  18 acatcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgctgca 117  Q
    |||||| || ||| |||| || ||||||||| ||||| | |||||| |||||  |||| |||||| |||| ||||||| |||| ||||||||| | ||||    
T  8327371 acatcaaaagtatagaaaattgatcatggctgttaaacatcttctttgtagaatttgggtggttagtttacgacatactttgcatgagggtaaggttgca 8327470  T
Q  118 gctgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagca 210  Q
    |||||||| || ||||||||||||||| | |  |||||||| |||||||||||| ||||| ||||| ||||||  ||||||  ||||||||||    
T  8327471 gctgatttcctggctaaaaagggtgctgtaaatgatagtagtcttgttattttgtatgaatccccttctgataaggcctctaccctcttagca 8327563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 963 - 1035
Target Start/End: Original strand, 10397868 - 10397940
Alignment:
Q  963 aatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||| | | ||||| ||||||| |||| |||||||||||||||| | ||||||||||||||    
T  10397868 aatccgcaggaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggc 10397940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 34249087 - 34249161
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||||||||||||| |||| |||||||||||||||| | || |||| ||||||    
T  34249087 aaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggc 34249161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 985 - 1037
Target Start/End: Complemental strand, 34188808 - 34188756
Alignment:
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||| |||||    
T  34188808 ttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggcta 34188756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 962 - 1033
Target Start/End: Original strand, 9047002 - 9047073
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||||||||||||||| | | ||||||||||||| |||  || ||||||||||||| ||||||||| ||||    
T  9047002 aaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctgg 9047073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 844 - 907
Target Start/End: Original strand, 31188283 - 31188346
Alignment:
Q  844 ttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||||| |||| |||| || |||| ||| ||||||| |||||||||||||||||||||||||||    
T  31188283 ttttctacggataatttcaaattttctgaggatatatctttcctgcggatcctaaaatcctaag 31188346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 963 - 1037
Target Start/End: Complemental strand, 2960724 - 2960650
Alignment:
Q  963 aatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||| | |  |||||||| |||||||  |||||||||||||| | | ||||||||||||||||    
T  2960724 aatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggcta 2960650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 23663833 - 23663907
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | ||| ||| ||||| |||| |||||||||||||||| | ||| ||||||||||    
T  23663833 aaaatccgcaggaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttggagccgagcctgggc 23663907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 856 - 905
Target Start/End: Original strand, 2836150 - 2836199
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| |||||||||||  ||||||| ||||||||||||||||||||||||    
T  2836150 aatttcacatttcctgtcgatatacttttcctgcggatcctaaaatccta 2836199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 882 - 975
Target Start/End: Original strand, 11761410 - 11761496
Alignment:
Q  882 tttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttactaggaacctaaacccttggcaaaatccgcaggaaa 975  Q
    |||||||||||||| ||| |||||||   ||||||||||||||| |||||||      ||||||||||||| ||||||||||||||||||||||    
T  11761410 tttcctgcggatcccaaa-tcctaaggaaacaattacccacgaa-ggtattac-----ctaggaacctaaaaccttggcaaaatccgcaggaaa 11761496  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 851 - 907
Target Start/End: Original strand, 31200135 - 31200191
Alignment:
Q  851 cggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaag 907  Q
    |||| |||| |||||||||||| |||||| ||| ||||||||| |||||||||||||    
T  31200135 cggataatttcacatttcctgcagatatatcttacctgcggattctaaaatcctaag 31200191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 9696084 - 9696011
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||| | | | |||||| |||||  |||| |||||||||||||||| | ||| ||||||||||    
T  9696084 aaatccgcaggaaaatctaaaaattctaataatgattgggcttgctacaaagaaagttggagccgagcctgggc 9696011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 6e-43; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 756 - 1037
Target Start/End: Original strand, 41199775 - 41200040
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggata--attttatagacttatcatataatattacttcttttctgcgg 853  Q
    |||||||||||| || |||||| | ||||||||||| ||||| ||||||||||||||  |||||||||||||  |||||||| ||||||| || ||||||    
T  41199775 tggcggagccaaaaaatttatagagcctgggcaaaaattgcatatttcatgcggatataattttatagacttcccatataatgttacttccttcctgcgg 41199874  T
Q  854 aaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttac-taggaacctaaa 952  Q
    | ||||||||||||||||||||                 ||||||||| |||||   |||||||||| |||| ||||||| |||||| | ||||||||||    
T  41199875 ataattgcacatttcctgcgga-----------------tcctaaaattctaaggaaacaattaccc-cgaa-ggtattacatttaccttggaacctaaa 41199955  T
Q  953 cccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
     ||||||||||||||||||||||||  |||| |||||||||| |||||| || ||||||| ||||||||||||||||||||||||    
T  41199956 tccttggcaaaatccgcaggaaaaggcagaggttctagtaattgctgggcttactacaaaaaaagtagaagctgagcctgggcta 41200040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 809 - 975
Target Start/End: Complemental strand, 43447794 - 43447628
Alignment:
Q  809 gataattttatagacttatcatataatattacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagt 908  Q
    ||||||||||||||||| ||||||||| || |||| |||||||||| ||||  |||||| ||| ||||||| ||||  |||||||||||||||||||||     
T  43447794 gataattttatagacttttcatataatgttgcttcctttctgcggataattttacattttctgtggatatatcttttatgcggatcctaaaatcctaagg 43447695  T
Q  909 ttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttggcaaaatccgcaggaaa 975  Q
      |||||||| ||| || ||||||| || || || |||| ||||| ||||||||||||| ||||||||    
T  43447694 aaacaattactcac-aaaggtattacatctatctgggaagctaaatccttggcaaaatctgcaggaaa 43447628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 943 - 1032
Target Start/End: Original strand, 43700210 - 43700299
Alignment:
Q  943 ggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctg 1032  Q
    |||||||||| ||||||||||||| ||||||||||| | | ||||||||||||| |||| |||||||||||||||| | ||| |||||||    
T  43700210 ggaacctaaatccttggcaaaatctgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctg 43700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 961 - 1029
Target Start/End: Original strand, 47511718 - 47511786
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagc 1029  Q
    |||||||||||||||||||| || ||||||||||||||||  ||| |||||||||| ||||||||||||    
T  47511718 aaaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaattagaagctgagc 47511786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 7500990 - 7500915
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | | ||||||||||||| |||| |||||||||||||||| | ||| ||||||||||||    
T  7500990 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcta 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 41218458 - 41218533
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | |  ||||||||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  41218458 aaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggcta 41218533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 882 - 971
Target Start/End: Complemental strand, 38239618 - 38239529
Alignment:
Q  882 tttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaatttac-taggaacctaaacccttggcaaaatccgcag 971  Q
    |||||| |||||||| ||||||||||   ||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||||||||||    
T  38239618 tttcctacggatccttaaatcctaagaaaacaattacccacgaa-ggtattacatttacctagaaacctaaatccttggcaaaatccgcag 38239529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 53651945 - 53651871
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  53651945 aaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 53651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 961 - 1034
Target Start/End: Complemental strand, 44047631 - 44047558
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctggg 1034  Q
    |||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | |||||||||||||    
T  44047631 aaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctggg 44047558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 961 - 1037
Target Start/End: Complemental strand, 9600397 - 9600321
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||||| | |  ||||||||||||||||| || ||||||||||| ||| |||||||| |||||||    
T  9600397 aaaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggcta 9600321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 961 - 1033
Target Start/End: Complemental strand, 12909867 - 12909795
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    |||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||    
T  12909867 aaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgg 12909795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 756 - 876
Target Start/End: Complemental strand, 38239727 - 38239607
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||| ||| ||| ||||||||| | |||||| |||| || |||||||  || |||||||||||||||||| ||| ||||| ||||||| ||  |||| |     
T  38239727 tggcagagtcaaaaattttatagagcctgggtaaaaattacacattttttgtggataattttatagacttctcacataatgttacttcattcttgcgaat 38239628  T
Q  856 aattgcacatttcctgcggat 876  Q
    ||||||||||||||| |||||    
T  38239627 aattgcacatttcctacggat 38239607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1033
Target Start/End: Original strand, 41358702 - 41358773
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||||| |||||||||||||  ||||| |||||| || | |||||||||||||||||||||||||| ||||    
T  41358702 aaatccgtaggaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgagtctgg 41358773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 961 - 1035
Target Start/End: Original strand, 25391898 - 25391972
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  ||| ||||||| |||||||| | ||||||||||||||    
T  25391898 aaaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggc 25391972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 26082564 - 26082496
Alignment:
Q  19 catcacaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaattta 87  Q
    |||||||| |||| |||||| ||||||||||||||  | |||||| ||||||||| |||||||||||||    
T  26082564 catcacaagtatgaaaatttgatcatggctattaagcatcttctttgtagagattagatggttaattta 26082496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 26278397 - 26278322
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| ||||||| | | ||||||||||||||| || ||||| |||||||| | | ||||||||||||||||    
T  26278397 aaatccgcatgaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggcta 26278322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 14461112 - 14461038
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||  | | |||||||||||||  ||| |||||||||||||| | | ||||||||||||||    
T  14461112 aaaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgagcctgggc 14461038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 28311324 - 28311250
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||| | | | |||||||||||||  ||| ||| |||||||||||| | ||||||||||||||    
T  28311324 aaaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttggagctgagcctgggc 28311250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 44625745 - 44625671
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||| ||||||||||| | | ||||||||||| | |||| |||||||||||||||| | ||| ||||||||||    
T  44625745 aaaatctgcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggc 44625671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 942 - 975
Target Start/End: Complemental strand, 4573610 - 4573577
Alignment:
Q  942 aggaacctaaacccttggcaaaatccgcaggaaa 975  Q
    ||||||||||||||||||||||||||||||||||    
T  4573610 aggaacctaaacccttggcaaaatccgcaggaaa 4573577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 844 - 905
Target Start/End: Original strand, 33179063 - 33179123
Alignment:
Q  844 ttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||||||| || |||| ||||||| ||||||||||| ||||||||| |||||||||||||||    
T  33179063 ttttctgcagataatttcacattttctgcggatatatctttcctgc-gatcctaaaatccta 33179123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 37516676 - 37516603
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | ||||||||||||| |||  |||||||||||||||| | | | ||||||||||    
T  37516676 aaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggc 37516603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 899
Target Start/End: Original strand, 26370985 - 26371047
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    ||||||| || ||||| | |||| |||||||||| |||||||| |||||||||||| ||||||    
T  26370985 ttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 26371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 961 - 1031
Target Start/End: Original strand, 33179198 - 33179268
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcct 1031  Q
    ||||| |||||||||||| | |  ||||||||||||||||  |||||||||| ||||| | ||||||||||    
T  33179198 aaaattcgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagctgagcct 33179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 873 - 922
Target Start/End: Original strand, 3142994 - 3143043
Alignment:
Q  873 ggatatacctttcctgcggatcctaaaatcctaagtttacaattacccac 922  Q
    |||| |||||||| |||||||||||||||||||||   ||||||||||||    
T  3142994 ggatttacctttcttgcggatcctaaaatcctaagaaaacaattacccac 3143043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 837 - 907
Target Start/End: Original strand, 41218298 - 41218372
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggata----tacctttcctgcggatcctaaaatcctaag 907  Q
    ||||||| || ||||| | |||| |||||||||||| ||||    ||| ||||||||||||||||||||||||||    
T  41218298 ttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggatcctaaaatcctaag 41218372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 960 - 1037
Target Start/End: Complemental strand, 54846098 - 54846021
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||| ||| |||||||| || ||  |||||||| ||   ||||||||||||||||||||| |||| ||||||||    
T  54846098 caaaatccacagaaaaagcgaaaggtttaagtaatggatgaacttgctacaaagaaagtagaagttgagtctgggcta 54846021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 756 - 1037
Target Start/End: Original strand, 39605705 - 39605977
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||||||||||  ||||||||||| | | ||||||| ||||| ||||  | |  ||||||||||||||||  |||||||| ||||||| ||  ||||||     
T  39605705 tggcggagccagaaattttataaagc-taggcaaaaattgcatattttctacaaataattttatagacttcccatataatgttacttcattcatgcggat 39605803  T
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacc 954  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||         ||||||||| ||||||  ||||| | |  |||||||| |    
T  39605804 aattgcacatttcctgcggatatatctttcctgcggatcctaaaatcctaag--------gacccacgaa-ggtattgcatttatcgaaaaacctaaatc 39605894  T
Q  955 cttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||| |||| |||||| |||| ||||| |||||| |||  ||| |||||||||||||||||||||| ||||||||    
T  39605895 cttggcaaaatctgcagaaaaagcaagaggttctaataatggatggacttgttacaaagaaagtagaagctgagtctgggcta 39605977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 757 - 1037
Target Start/End: Complemental strand, 13695307 - 13695015
Alignment:
Q  757 ggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaa 856  Q
    |||||||||| ||||||| || | ||| || |||| ||||||||||| ||| |||||||||||||||||  | |||||| ||||||| || ||||    |    
T  13695307 ggcggagccaggaattttgtagagcctaggaaaaaattgcacatttcctgcagataattttatagacttcccgtataatgttacttccttcctgcaatta 13695208  T
Q  857 attgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaaccc 955  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||| ||||   ||||||||||| ||| ||||||| ||||| || |||||||||| ||    
T  13695207 attgcacatttcctgcgggtatacttttcttgcggatcctaaaatcgtaaggaaacaattacccatgaa-ggtattacatttacctgggaacctaaatcc 13695109  T
Q  956 ttggca------------aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||            |||||| ||||||||||||||  |||||||||||| ||   |||||||||||||||| ||||||||||||| ||||    
T  13695108 ttggcaaaatctgcaggtaaatccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagcta 13695015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 11319283 - 11319050
Alignment:
Q  19 catcacaaatatggaaatt-----taatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaacgc 113  Q
    |||||||||||||||||||     |||| |||||||||||| |||||||||||||||||| | |||||| |||| || |||| ||||| || | ||||||    
T  11319283 catcacaaatatggaaattgggtttaattatggctattaaacagcttcttcgtagagatttggtggttagtttacgatatactttgcgcgaagataacgc 11319184  T
Q  114 tgcagctga-ttttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcaga 212  Q
     ||| |||| |||| ||| | ||||||  |||||||| |||| ||||||||||||||||||||||| ||||  |||||| |||||| ||||||| |||||    
T  11319183 agcaactgatttttttaggttaaaaggacgctcttagtgatattagccttgttattttgaatgaag-cccttatgatatggcctctatcctctttgcaga 11319085  T
Q  213 tgcaatagatgttgagtttgttcgactctaatatg 247  Q
    |||||| | |||||||||| |||||| ||| ||||    
T  11319084 tgcaattggtgttgagtttattcgaccctagtatg 11319050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 19492817 - 19493044
Alignment:
Q  23 acaaatatggaaatttaatcatggctattaaagagcttcttcgtagagattggatggttaatttatgacatacattgcgtgagggtaac---gctgcagc 119  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||| || ||| || |||||   |  | |||    
T  19492817 acaaatatgaaaatttaatcatggctattaaacaccttcttcgtagagattggatggttagtttacgccatacttttcgtaagcgtaacattgtagtagc 19492916  T
Q  120 tgattttctagctaaaaagggtgctcttagggatagtagccttgttattttgaatgaagcccctcctgatatagcctctgtcctcttagcagatgcaata 219  Q
    ||||||||||  |||||||| ||||||||    ||||| ||||||||||||||||||| |||||||||| || | |||| ||||||||||| ||   ||     
T  19492917 tgattttctacttaaaaaggatgctcttaatagtagtaaccttgttattttgaatgaaacccctcctgacatggtctctatcctcttagcaaatatcatg 19493016  T
Q  220 gatgttgagtttgttcgactctaatatg 247  Q
    | |||||||||||||| |||||| ||||    
T  19493017 ggtgttgagtttgttcaactctagtatg 19493044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 783 - 975
Target Start/End: Original strand, 7159455 - 7159639
Alignment:
Q  783 tgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaattgcacatttcctgcggatatacct 882  Q
    ||||||||  |||||  |||| ||||||||||||||||||||| | ||||||| ||||||| |||        ||||||||||||| |||||||||||||    
T  7159455 tgggcaaagattgcatgtttcctgcggataattttatagacttcttatataatgttacttccttt--------aattgcacatttcatgcggatatacct 7159546  T
Q  883 ttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttggcaaaatccgcaggaaa 975  Q
    || ||||||||||||||||||||||   ||||||||||||||| ||||||| ||||| |||| ||||||||  |||||||||||||||||||||    
T  7159547 tttctgcggatcctaaaatcctaaggaaacaattacccacgaa-ggtattacatttacctagaaacctaaattcttggcaaaatccgcaggaaa 7159639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 756 - 965
Target Start/End: Complemental strand, 9738651 - 9738442
Alignment:
Q  756 tggcggagccaagaattttataaaacctgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaa 855  Q
    |||||||| ||  ||||||||||||  |||| |||| ||| | ||||  |||| ||||||||||| ||||   ||||||| ||||||| || || ||||     
T  9738651 tggcggagtcagaaattttataaaatttgggtaaaaattgtatattttctgcgaataattttataaactttcaatataatgttacttccttcctacggat 9738552  T
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacc 954  Q
    |||| || |||| |||||||||||||| || |||||||||||||||||||||   ||||||||| ||||| ||||| | ||||| || |||||||||| |    
T  9738551 aattacatattttctgcggatatacctatcatgcggatcctaaaatcctaaggaaacaattacctacgaa-ggtatcacatttacctgggaacctaaatc 9738453  T
Q  955 cttggcaaaat 965  Q
    ||| |||||||    
T  9738452 cttcgcaaaat 9738442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 13694875 - 13694800
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||| ||||||||||||||  |||||||||||| |||| |||||||||||||||| |||| |||||||||||||    
T  13694875 aaatccacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggcta 13694800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 961 - 1037
Target Start/End: Complemental strand, 42989575 - 42989499
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||| ||||| ||||||||||  ||||||||||||||||| ||||  ||||||||||||||||||| |||||||||    
T  42989575 aaaattcgcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaagctgatcctgggcta 42989499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 960 - 1023
Target Start/End: Original strand, 7159663 - 7159726
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaag 1023  Q
    |||||||  ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  7159663 caaaatcaacaggaaaagcgagaggttctagtaatggctgagcttgctacaaagaaagtagaag 7159726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 9738412 - 9738337
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||| ||||||  |||||||||||| |||| ||||| |||||||||||||||||||| | ||||||    
T  9738412 aaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaagctgagtcagggcta 9738337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 34444007 - 34443933
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  34444007 aaaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 34443933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 943 - 1035
Target Start/End: Complemental strand, 2476463 - 2476371
Alignment:
Q  943 ggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||| |||||  |||||||||||||||||| | | |||||||||||||  ||  |||||||||||||| | | ||||||||||||||    
T  2476463 ggaacctaaatccttgataaaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggc 2476371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 961 - 1037
Target Start/End: Complemental strand, 15503957 - 15503881
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||||| | | ||||||||||||| | || |||||||||||||| | |||| |||||||||||||    
T  15503957 aaaatccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggcta 15503881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 943 - 1018
Target Start/End: Complemental strand, 6900832 - 6900757
Alignment:
Q  943 ggaacctaaacccttggcaaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagt 1018  Q
    |||||||||| ||||| ||||||| ||||||||||| | |  ||||||||||||||| | ||||||||||||||||    
T  6900832 ggaacctaaatccttgacaaaatctgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagt 6900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 7162159 - 7162234
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | |  || |||||||||||||| |||||||||||||| | | ||||||||||||||||    
T  7162159 aaatccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcta 7162234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 16667569 - 16667644
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||||||||||| | |  ||||||||||||||||  |||||||||||||||| | ||||||| ||||||||    
T  16667569 aaatccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgagtctgggcta 16667644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 848 - 906
Target Start/End: Complemental strand, 6900907 - 6900849
Alignment:
Q  848 ctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaaatcctaa 906  Q
    ||||||| |||| |||||||| |||||||||| |||||| |||||||||||||||||||    
T  6900907 ctgcggataatttcacatttcttgcggatatatctttcccgcggatcctaaaatcctaa 6900849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 856 - 905
Target Start/End: Complemental strand, 15504081 - 15504032
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  15504081 aatttcacatttcctgcggatatatctttcccgcggatcctaaaatccta 15504032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 17192745 - 17192818
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||| ||| | |  ||||||||||||||| | |||||||||||||||| | ||||||||||||||    
T  17192745 aaatccgcaggaagagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctgggc 17192818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 16567831 - 16567756
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| ||||||| | |  ||||||||||||||||  |||||||||||||| | | ||||||||||||||||    
T  16567831 aaatccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggcta 16567756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 32953743 - 32953818
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||| ||||||||| | |  ||||||||||||||||| |||||||||||||| | | |||||||||| |||||    
T  32953743 aaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggcta 32953818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 961 - 1035
Target Start/End: Complemental strand, 30249006 - 30248932
Alignment:
Q  961 aaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||| |||||| | | ||||||||||| | |||| |||||||||||||||| | ||| ||||||||||    
T  30249006 aaaatccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggc 30248932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 869 - 906
Target Start/End: Original strand, 8214615 - 8214652
Alignment:
Q  869 ctgcggatatacctttcctgcggatcctaaaatcctaa 906  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8214615 ctgcggatatatctttcctgcggatcctaaaatcctaa 8214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 856 - 905
Target Start/End: Complemental strand, 21069174 - 21069125
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| |||||||||||| |||||| |||||||| ||||||||||||||||    
T  21069174 aatttcacatttcctgcagatatatctttcctgtggatcctaaaatccta 21069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 33006935 - 33006862
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    ||||||||||||||||| | | | | ||||||||| |||| |||||||||||||||| | ||| ||||||||||    
T  33006935 aaatccgcaggaaaagctaaaaaatttagtaatggttgggtttgctacaaagaaagttggagccgagcctgggc 33006862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 985 - 1037
Target Start/End: Original strand, 13942881 - 13942933
Alignment:
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||||| ||||||| |||||||||||||||| | | ||||||||||||||    
T  13942881 ttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggcta 13942933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 903
Target Start/End: Original strand, 17192608 - 17192655
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatcc 903  Q
    |||| ||||||| ||||| ||||| |||||||||||||||||||||||    
T  17192608 aatttcacattttctgcgaatatatctttcctgcggatcctaaaatcc 17192655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 878 - 921
Target Start/End: Original strand, 19935103 - 19935146
Alignment:
Q  878 tacctttcctgcggatcctaaaatcctaagtttacaattaccca 921  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  19935103 tacctttcctgcggatcctaaaatcctaaggaaacaattaccca 19935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 844 - 899
Target Start/End: Complemental strand, 30249109 - 30249054
Alignment:
Q  844 ttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    |||||||| || |||| |||||||||| |||||||| |||||||||||| ||||||    
T  30249109 ttttctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaa 30249054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 962 - 1037
Target Start/End: Original strand, 43228718 - 43228793
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    ||||||| ||||||||| | |  ||||||||||||||||| |||||||||||||| | | || ||||||| |||||    
T  43228718 aaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggcta 43228793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 33007058 - 33006996
Alignment:
Q  837 ttacttcttttctgcggaaaattgcacatttcctgcggatatacctttcctgcggatcctaaa 899  Q
    ||||||| || ||||| | |||| |||||||||| |||||||| |||||||||||| ||||||    
T  33007058 ttacttccttcctgcgaataatttcacatttcctacggatatatctttcctgcggaacctaaa 33006996  T

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Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 1035
Target Start/End: Complemental strand, 34846395 - 34846322
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||| |||| | | ||||||||||||| | |  |||||||||||||||| | ||| ||||||||||    
T  34846395 aaatccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggc 34846322  T

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Target: scaffold0108 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 783 - 876
Target Start/End: Original strand, 20875 - 20968
Alignment:
Q  783 tgggcaaaacttgcacatttcatgcggataattttatagacttatcatataatattacttcttttctgcggaaaattgcacatttcctgcggat 876  Q
    |||| |||| ||||||||||| | |||||||||||||||||||   ||||||| ||||||| || ||||||| |||||||||||||||||||||    
T  20875 tgggtaaaaattgcacatttcctacggataattttatagacttcctatataatgttacttccttcctgcggataattgcacatttcctgcggat 20968  T

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Target: scaffold0108; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 960 - 1037
Target Start/End: Original strand, 21073 - 21148
Alignment:
Q  960 caaaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||||| || |  ||  ||||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  21073 caaaatccgcaggaaaagtgaaaagtt--agtaatggctgggcttgtaacaaagaaagttgaagctgagcctgggcta 21148  T

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Target: scaffold0108; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 882 - 971
Target Start/End: Original strand, 20957 - 21046
Alignment:
Q  882 tttcctgcggatcctaaaatcctaagtttacaattacccacgaatggtattaaattta-ctaggaacctaaacccttggcaaaatccgcag 971  Q
    ||||||||||||||||||||||||||   |||||||||| |||| ||||| | ||||| || | ||| ||||  |||||||||||||||||    
T  20957 tttcctgcggatcctaaaatcctaaggaaacaattacccgcgaa-ggtatcacatttacctggaaacttaaatacttggcaaaatccgcag 21046  T

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Target: scaffold0638 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 962 - 1037
Target Start/End: Complemental strand, 4139 - 4064
Alignment:
Q  962 aaatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||| |||||||||||| | |  ||||||||||||||||| |||||||||||||| | | ||||||||||||||||    
T  4139 aaattcgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcta 4064  T

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Target: scaffold0075 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 963 - 1037
Target Start/End: Complemental strand, 6950 - 6876
Alignment:
Q  963 aatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggcta 1037  Q
    |||||||||||||||| | | |||||||||||||  ||| |||||||||||||||| | |||| || ||||||||    
T  6950 aatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggcta 6876  T

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Target: scaffold0075; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 963 - 1035
Target Start/End: Complemental strand, 11563 - 11492
Alignment:
Q  963 aatccgcaggaaaagcgagagattctagtaatggctggggttgctacaaagaaagtagaagctgagcctgggc 1035  Q
    |||||||||||||||  | | |||||||||||||  ||| |||||||||||||||| | ||||||||||||||    
T  11563 aatccgcaggaaaagaaaaa-attctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 11492  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 985 - 1033
Target Start/End: Original strand, 109409 - 109457
Alignment:
Q  985 ttctagtaatggctggggttgctacaaagaaagtagaagctgagcctgg 1033  Q
    ||||||||||  |||||||||||||||||||||| | ||||||||||||    
T  109409 ttctagtaataactggggttgctacaaagaaagttggagctgagcctgg 109457  T

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Target: scaffold0021; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 856 - 905
Target Start/End: Original strand, 112167 - 112216
Alignment:
Q  856 aattgcacatttcctgcggatatacctttcctgcggatcctaaaatccta 905  Q
    |||| ||| |||| || ||||||| |||||||||||||||||||||||||    
T  112167 aatttcacgtttcatgtggatatatctttcctgcggatcctaaaatccta 112216  T

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