View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_20 (Length: 272)
Name: NF9168_low_20
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 21993399 - 21993138
Alignment:
| Q |
1 |
tgattactgattcaccatcccattttactgtaagagagtcaacattgtcattccattgagttactctattggctgcaataacaagagtgtgtgtgtcgaa |
100 |
Q |
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| T |
21993399 |
tgattactgattcaccatcccattttactgtaagagagtcaacattgtcattccattgagttactctattggctgcaataacaagagtgtgtgtgtcgaa |
21993300 |
T |
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| Q |
101 |
catgagagaaagtgcttgcacccatgtgtagtcgcgagtccttccctgaggtcgagtaccgatgaagtgtgcgttgatttggaattcgtcgtctgaaact |
200 |
Q |
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| T |
21993299 |
catgagagaaagtgcttgcacccatgtgtagtcgcgagtccttccctgaggccgagtaccgatgaagtgtgcattgatttggaattcgtcgtctgaaact |
21993200 |
T |
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| Q |
201 |
atggcaaagtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaccaaa |
262 |
Q |
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| T |
21993199 |
atggcaaagtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaacaaa |
21993138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 22010615 - 22010357
Alignment:
| Q |
4 |
ttactgattcaccatcccattttactgtaagagagtcaacattgtcattccattgagttactctattggctgcaataacaagagtgtgtgtgtcgaacat |
103 |
Q |
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||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22010615 |
ttactaattcgccgtcccattttactgtaagagagtcaactttgtcattccattgagttactctattggctgcaataacaagagtgtgtgtgtcgaacat |
22010516 |
T |
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| Q |
104 |
gagagaaagtgcttgcacccatgtgtagtcgcgagtccttccctgaggtcgagtaccgatgaagtgtgcgttgatttggaattcgtcgtctgaaactatg |
203 |
Q |
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|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
22010515 |
gacagaaagtgcttgcacccatgtataatcgcgagtccttccctgaggtcgagtaccgatgaagtgtgcattgatttggaaatcatcgtctgaaactatg |
22010416 |
T |
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| Q |
204 |
gcaaagtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaccaaa |
262 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
22010415 |
gcgaagtttcctcctttggctccatggaagtagaacatcacaccgtctccaccaacaaa |
22010357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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