View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_22 (Length: 249)
Name: NF9168_low_22
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 26858174 - 26857933
Alignment:
| Q |
8 |
aacctcttcggatttgttgttgtaccactaaaacagaagctgaggtagaaaaatcttgagaactaacataatcaccaatgattcctaactcatcactttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26858174 |
aacctcttcggatttgttgttgtaccactaaaacagaagctgaggtagaaaaatcttgagaactaacataatcaccaatgattcctaactcatcactttc |
26858075 |
T |
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| Q |
108 |
actccattcagataaccctgtaagaagagaagggttaatcccttgtttccttccaattatcaaaagatcataaccaccatctttcatatcatcaattgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
26858074 |
actccattcagataaccctgtaagaagagaagggttaatcccttgtttccttccaactatcaaaagatcataaccaacatctttcatatcatgaattgct |
26857975 |
T |
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| Q |
208 |
gcaattgtttcttcaccactcttaaccacaacttctctatac |
249 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||| |
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| T |
26857974 |
gcaattgtttcttcaccacttttaaccacgacttctctatac |
26857933 |
T |
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