View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_23 (Length: 237)
Name: NF9168_low_23
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_23 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 12471512 - 12471623
Alignment:
| Q |
111 |
tcttgattcatcctcgattccaatgaaaatattgtgaccaatacaaaaactcataaaaataacggttgaaagaaagtcaaagcaactccaacaaaagata |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
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| T |
12471512 |
tcttgattcatcctcgattccaatgaaaatatacagaccaatacaaaaactcataaaaataatggttgaaagaaagtcaaagcaactccagcaaaagcta |
12471611 |
T |
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| Q |
211 |
gttatttgaagg |
222 |
Q |
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|||||||||||| |
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| T |
12471612 |
gttatttgaagg |
12471623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 12525921 - 12526032
Alignment:
| Q |
111 |
tcttgattcatcctcgattccaatgaaaatattgtgaccaatacaaaaactcataaaaataacggttgaaagaaagtcaaagcaactccaacaaaagata |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
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| T |
12525921 |
tcttgattcatcctcgattccaatgaaaatatacagaccaatacaaaaactcataaaaataatggttgaaagaaagtcaaagcaactccagcaaaagcta |
12526020 |
T |
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| Q |
211 |
gttatttgaagg |
222 |
Q |
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|||||||||||| |
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| T |
12526021 |
gttatttgaagg |
12526032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 12490648 - 12490696
Alignment:
| Q |
111 |
tcttgattcatcctcgattccaatgaaaatattgtgaccaatacaaaaa |
159 |
Q |
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| T |
12490648 |
tcttgattcatcctggattccgatggaaatatagagaccaatacaaaaa |
12490696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 29829 - 29781
Alignment:
| Q |
111 |
tcttgattcatcctcgattccaatgaaaatattgtgaccaatacaaaaa |
159 |
Q |
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|||||||||||||| |||||| ||| |||||| | |||||||||||||| |
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| T |
29829 |
tcttgattcatcctggattccgatggaaatatagagaccaatacaaaaa |
29781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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