View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_3 (Length: 818)
Name: NF9168_low_3
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 15 - 800
Target Start/End: Complemental strand, 37489896 - 37489105
Alignment:
| Q |
15 |
ggacatcagaggatgaaatgagttgtggaaaggttgaagcagtagaaggtggtcatgatgaactttgtggcacatcatgtcaaggtgataaagagcttaa |
114 |
Q |
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| T |
37489896 |
ggacatcagaggatgaaatgagttgtggaaaggttgaagcagtagaaggtggtcatgatgaactttgtggcacatcatgtccaggtgataaagagcttaa |
37489797 |
T |
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| Q |
115 |
agaaatgcttcttcgtaagtatgggggttaccttagcaacttaagacaggaatttctcaagaaaaggaaaaagggcaaactaccaaaggatgcaagaaaa |
214 |
Q |
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| T |
37489796 |
agaaatgcttcttcgtaagtatgggggttaccttagcaacttaagacaggaatttctcaagaaaaggaaaaagggtaaactaccaaaggatgcaagaaaa |
37489697 |
T |
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| Q |
215 |
gcattgatggattggtggaacgtccactataggtggccttatcccacggtaattcaaattcatatcatacaaagcatactagtacatgtaattttttata |
314 |
Q |
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| T |
37489696 |
gcattgatggattggtggaacgtccactataggtggccttatcccacggtaattcaaattcatatcatacaaagcatactagtacatgtaattttt-ata |
37489598 |
T |
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| Q |
315 |
taagaaagcgtactagtatat-------catatattttattgtgcaattaatgctaaccaaaacaatacatatattttgtccgacttcaaatcttgacta |
407 |
Q |
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| T |
37489597 |
taagaaagtgtactagtatatagtatatcatatattttattgtgcaattaatgttaaccaaaacaatacatatattttgtccgacttcaaatcttgacta |
37489498 |
T |
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| Q |
408 |
acaattcttgatcaaattttacttatcaaaaggttgacttgaattccaagtcacatgataacaacttcaactgcattgtgtcaaacttctttaatatatt |
507 |
Q |
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| T |
37489497 |
acaattcttgatcaaattttacttatcaaaaggttgacttgaactccaagtcacatgataacaacttcaactccattgtgtcaaacttctttaatatatt |
37489398 |
T |
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| Q |
508 |
gacattctaattgctaaaatcctgaaagattataatttgatgaatttttcaggaggaggagaaactgcagctatcagatatgactggacttgatataaag |
607 |
Q |
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| T |
37489397 |
gacattctaattgctaaaatcctaaaagattataatttgatgaatttttcaggaggaggagaaactgcagctatcagatatgactggacttgatataaag |
37489298 |
T |
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| Q |
608 |
cagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatag |
707 |
Q |
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| T |
37489297 |
cagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatag |
37489198 |
T |
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| Q |
708 |
caggacctctgtaagttaattctgcaggtggagtcgaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaat |
800 |
Q |
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| T |
37489197 |
caggacctctgtaagttaattctgcaggtggagtagaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaat |
37489105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 663
Target Start/End: Original strand, 4661626 - 4661684
Alignment:
| Q |
605 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
663 |
Q |
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| T |
4661626 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
4661684 |
T |
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