View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_5 (Length: 676)
Name: NF9168_low_5
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 25378646 - 25379115
Alignment:
| Q |
18 |
tcttcccctctgaaaaattcatattcccaagatgcaactcaacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaag |
117 |
Q |
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| T |
25378646 |
tcttcccctctgaaaaattcatattcccaagatgcaactccacgttgttctgattctgaattccattcagcattggaggaaggtagtggtcagaattaag |
25378745 |
T |
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| Q |
118 |
gtaattcatcataggtgtcgaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatca |
217 |
Q |
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| T |
25378746 |
gtaattcatcataggtgtggaagaagtactcaagtacatgttgttttgtgaatttggcttagggtaattggaaggattggaatgaacaaatccacaatca |
25378845 |
T |
|
| Q |
218 |
gtaacatcagggagaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcag |
317 |
Q |
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| T |
25378846 |
gtaacatcagggagaatctgattactgttagtttgggaagaataatccaatggataagagtttgaagagggtttcttggagtaggggttaacaggttcag |
25378945 |
T |
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| Q |
318 |
cattattattcaccttgaaaagttgttgcatgaagagaagttcatcatcataagattcagatataagtggtgatgatgaattttcatgagataggttaga |
417 |
Q |
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| T |
25378946 |
cattattattcaccttgaaaagttgctgcatgaagagaagttcatcatcataagattcagatataagtggtgatgatgaattttcatgagataggttaga |
25379045 |
T |
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| Q |
418 |
aaaaacaaaggaagattggtttgaagaagggtcctcagagatcgctgacacggagctagtagcagtagta |
487 |
Q |
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| T |
25379046 |
aaaaacaaaggaagattggtttgaagaagggtcctcagagatcgctgacacggagctagtagcagtagta |
25379115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 478 - 664
Target Start/End: Original strand, 25379139 - 25379325
Alignment:
| Q |
478 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
577 |
Q |
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| T |
25379139 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
25379238 |
T |
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| Q |
578 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctctgct |
664 |
Q |
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| T |
25379239 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgct |
25379325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 29671189 - 29671268
Alignment:
| Q |
575 |
ttgttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaat |
654 |
Q |
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| T |
29671189 |
ttgttctttcttcttgaattttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctggaat |
29671268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 605 - 648
Target Start/End: Complemental strand, 43866564 - 43866521
Alignment:
| Q |
605 |
tttgttgcattccaatgattctttattgcattctcagttcttcc |
648 |
Q |
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| T |
43866564 |
tttgttgcattccaatggttttttattgcattctcagttcttcc |
43866521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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