View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9168_low_6 (Length: 612)
Name: NF9168_low_6
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9168_low_6 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Original strand, 218823 - 219424
Alignment:
| Q |
11 |
acctgtgattgtaccacgtgtttcaggtatacacatgttgttaaagagctttgaaccaattcatggtgttcttctatgtgaaggagaagacatagatcct |
110 |
Q |
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| T |
218823 |
acctgtgattgtaccacgtgtttcaggtatacacatgttgttaaagagctttgaaccaattcatggtgttcttctatgtgaaggagaagacatagatcct |
218922 |
T |
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| Q |
111 |
tcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaa |
210 |
Q |
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| T |
218923 |
tcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaa |
219022 |
T |
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| Q |
211 |
aagattcaattgaattagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtccttaatgttgcatgtgg |
310 |
Q |
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| T |
219023 |
aagattcaattgaattaatcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtccttaatgttgcatgtgg |
219122 |
T |
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| Q |
311 |
aggtaccctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatggtcatagacatgttattaag |
410 |
Q |
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| T |
219123 |
aggtaccctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatggtcatagacatgttattaag |
219222 |
T |
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| Q |
411 |
gttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagctatcatcatcaaggggtta |
510 |
Q |
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| T |
219223 |
gttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagctatcatcatcaaggggtta |
219322 |
T |
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| Q |
511 |
agagattggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttatgacccttatgcttataatccagaagagggtaagtt |
610 |
Q |
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| T |
219323 |
agagattggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttatgacccttatgcttataatccagaagagggtaagtt |
219422 |
T |
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| Q |
611 |
ta |
612 |
Q |
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| T |
219423 |
ta |
219424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 360 - 612
Target Start/End: Complemental strand, 31652031 - 31651782
Alignment:
| Q |
360 |
gtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaa |
459 |
Q |
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| T |
31652031 |
gtgatgcatattaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaag |
31651932 |
T |
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| Q |
460 |
atgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggttt |
559 |
Q |
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| T |
31651931 |
atgataaaatggac---attttggttaatagctatcatcatcaaggtgttaagagacttgcacagcgttttgttccaatggcttttgctcctgatggttt |
31651835 |
T |
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| Q |
560 |
aattgaagggttttatgacccttatgcttataatccagaagagggtaagttta |
612 |
Q |
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| T |
31651834 |
gattgaagggttttatgaccctgatgcttataatccagaagagggtaagttta |
31651782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 24 - 316
Target Start/End: Complemental strand, 31652376 - 31652090
Alignment:
| Q |
24 |
ccacgtgtttcaggtatacacatgttgttaaagagctttgaaccaattcatggtgttcttctatgtgaaggagaagacatagatccttcatggtacgaac |
123 |
Q |
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| T |
31652376 |
ccacgtgtttccggggtccacatgttgttagatagctttgaaccaatccatggtgtgcttctatgtgaaggagaagacattgatccatcatggtacgagg |
31652277 |
T |
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| Q |
124 |
aagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgacacaaacattgacaaagaaaaagattcaattga |
223 |
Q |
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| T |
31652276 |
aaga---cacatcatgt---ctttctcaagaggaattagaagaaataagaagactacatgtgagtgacacatcaattgacaaagaaaaagattcaattga |
31652183 |
T |
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| Q |
224 |
attagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtccttaatgttgcatgtggaggtac |
316 |
Q |
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| T |
31652182 |
attagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtagagggtcacaactcctaaatgtggcatgtggaggtac |
31652090 |
T |
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