View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9168_low_8 (Length: 533)

Name: NF9168_low_8
Description: NF9168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9168_low_8
NF9168_low_8
[»] chr2 (15 HSPs)
chr2 (14-514)||(37714002-37714500)
chr2 (404-514)||(13716741-13716851)
chr2 (405-514)||(20142936-20143045)
chr2 (404-503)||(37899545-37899644)
chr2 (405-512)||(38320233-38320340)
chr2 (404-502)||(32976065-32976163)
chr2 (409-514)||(3167868-3167973)
chr2 (406-513)||(24183940-24184047)
chr2 (425-514)||(35457389-35457477)
chr2 (404-514)||(19945755-19945865)
chr2 (419-514)||(27407404-27407499)
chr2 (414-514)||(31645128-31645229)
chr2 (410-514)||(4434270-4434377)
chr2 (404-438)||(14131134-14131168)
chr2 (442-511)||(27007174-27007243)
[»] chr1 (13 HSPs)
chr1 (403-514)||(35412992-35413103)
chr1 (414-514)||(10061569-10061669)
chr1 (420-514)||(26469927-26470021)
chr1 (404-514)||(29657331-29657441)
chr1 (405-514)||(43537176-43537288)
chr1 (404-490)||(21540041-21540127)
chr1 (404-514)||(23906637-23906747)
chr1 (405-504)||(49313575-49313674)
chr1 (414-514)||(35149695-35149795)
chr1 (408-514)||(11469994-11470101)
chr1 (404-474)||(48852610-48852680)
chr1 (404-438)||(13085137-13085171)
chr1 (409-454)||(35360380-35360425)
[»] chr6 (7 HSPs)
chr6 (410-514)||(32871784-32871888)
chr6 (405-514)||(6784733-6784842)
chr6 (404-514)||(2130523-2130633)
chr6 (404-511)||(34713468-34713575)
chr6 (403-514)||(28867151-28867262)
chr6 (430-514)||(6519233-6519317)
chr6 (409-503)||(11301808-11301902)
[»] chr5 (10 HSPs)
chr5 (404-514)||(25493786-25493896)
chr5 (405-514)||(30071739-30071848)
chr5 (404-514)||(40519146-40519255)
chr5 (405-514)||(3040291-3040400)
chr5 (405-514)||(30735352-30735461)
chr5 (405-514)||(30700901-30701008)
chr5 (406-474)||(24402009-24402080)
chr5 (404-514)||(21259185-21259294)
chr5 (408-474)||(35875810-35875876)
chr5 (162-293)||(28432798-28432929)
[»] chr4 (14 HSPs)
chr4 (405-514)||(41545383-41545492)
chr4 (409-514)||(19482490-19482595)
chr4 (418-514)||(25817646-25817742)
chr4 (408-514)||(42504225-42504328)
chr4 (442-514)||(29065309-29065381)
chr4 (404-514)||(37762772-37762884)
chr4 (404-494)||(16528530-16528620)
chr4 (416-474)||(41485716-41485774)
chr4 (414-514)||(51304330-51304429)
chr4 (405-492)||(42108739-42108826)
chr4 (404-514)||(24060543-24060653)
chr4 (422-514)||(5288507-5288599)
chr4 (404-495)||(13218423-13218513)
chr4 (228-282)||(36438141-36438195)
[»] chr8 (10 HSPs)
chr8 (404-514)||(38585119-38585229)
chr8 (405-514)||(29414352-29414459)
chr8 (405-514)||(24068148-24068256)
chr8 (405-514)||(5718478-5718595)
chr8 (404-474)||(29543683-29543753)
chr8 (442-514)||(26415557-26415629)
chr8 (407-453)||(35393710-35393756)
chr8 (404-438)||(26415530-26415564)
chr8 (404-474)||(36947296-36947368)
chr8 (442-514)||(43063883-43063955)
[»] chr7 (13 HSPs)
chr7 (404-514)||(21882800-21882910)
chr7 (404-514)||(20125557-20125667)
chr7 (404-514)||(46297580-46297690)
chr7 (404-493)||(23611801-23611890)
chr7 (404-514)||(24250485-24250595)
chr7 (406-514)||(22631449-22631557)
chr7 (408-508)||(23730540-23730640)
chr7 (404-474)||(8123658-8123728)
chr7 (413-505)||(48154850-48154943)
chr7 (463-514)||(1985032-1985083)
chr7 (442-514)||(46413774-46413849)
chr7 (414-514)||(19511387-19511487)
chr7 (406-438)||(46413842-46413874)
[»] chr3 (10 HSPs)
chr3 (404-514)||(1632776-1632885)
chr3 (442-514)||(26442954-26443026)
chr3 (413-513)||(40840680-40840780)
chr3 (404-482)||(45852997-45853075)
chr3 (404-514)||(48897711-48897821)
chr3 (405-514)||(34905814-34905923)
chr3 (442-514)||(18271994-18272066)
chr3 (414-474)||(10593531-10593591)
chr3 (409-474)||(3169319-3169382)
chr3 (429-474)||(2671895-2671940)
[»] scaffold0148 (1 HSPs)
scaffold0148 (152-334)||(26098-26280)
[»] scaffold0018 (1 HSPs)
scaffold0018 (414-514)||(69956-70056)
[»] scaffold0122 (1 HSPs)
scaffold0122 (404-514)||(18601-18711)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Original strand, 37714002 - 37714500
Alignment:
Q  14 ttcgtgttcggtcttccaacatttcacatttgaaagaaaggttagtaaatttatgattgtaaaaatgaaagtacggtttaaggaagttatattatacgta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37714002 ttcgtgttcggtcttccaacatttcacatttgaaagaaaggttagtaaatttatgattgtaaaaatgaaagtacggtttaaggaagttatattatacgta 37714101  T
Q  114 tacatatggaatatgtgaaaccaaccaaatataaatgtgtccaagctcttgtttgacatgtattcatacagtaggattttttcgtctcctttaatgcaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37714102 tacatatggaatatgtgaaaccaaccaaatataaatgtgtccaagctcttgtttgacatgtattcatacagtaggattttttcgtctcctttaatgcaat 37714201  T
Q  214 agcccctaagcctaacaagatttcgatgttgaagtttggcaatcaaaacaatctcatttttaaattcttgcaagccttgagttgaaacactcgaaagcct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37714202 agcccctaagcctaacaagatttcgatgttgaagtttggcaatcaaaacaatctcatttttaaattcttgcaagccttgagttgaaacactcgaaagcct 37714301  T
Q  314 cttgatagcaatctcttgacctccaggaaaccttccctgaataaaaataatcatgaataaattcttgcataaaatgaatattttgtagcgagagcattgc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37714302 cttgatagcaatctcttgacctccaggaaaccttccctgaataaaaataatcatgaataaattcttgcataaaatgaatattttgtagc--gagcattgc 37714399  T
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||||||||||    
T  37714400 tatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaat 37714499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 13716851 - 13716741
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||| || ||||||||| |||||||    
T  13716851 agagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaat 13716752  T
Q  504 ggtgtgtaatt 514  Q
     ||||||||||    
T  13716751 agtgtgtaatt 13716741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 20142936 - 20143045
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| ||||| |||||||||| ||||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  505 gtgtgtaatt 514  Q
     |||||||||    
T  20143036 atgtgtaatt 20143045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 404 - 503
Target Start/End: Complemental strand, 37899644 - 37899545
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| || ||||||||| |||||||    
T  37899644 agagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggtaat 37899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 405 - 512
Target Start/End: Complemental strand, 38320340 - 38320233
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| | |||||  ||||||||||| ||||||||    
T  38320340 gagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatg 38320241  T
Q  505 gtgtgtaa 512  Q
     |||||||    
T  38320240 atgtgtaa 38320233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 404 - 502
Target Start/End: Complemental strand, 32976163 - 32976065
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaa 502  Q
    |||||| |||||||||||||||||| ||||||||| |||| |||||||||| || |||||||||||||||| | ||||| |||||||||||||||||||    
T  32976163 agagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaa 32976065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 409 - 514
Target Start/End: Original strand, 3167868 - 3167973
Alignment:
Q  409 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgt 508  Q
    |||||||||||| || | ||||||||| || ||||| | |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||    
T  3167868 attgctatttatttaaaaagtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgt 3167967  T
Q  509 gtaatt 514  Q
    ||||||    
T  3167968 gtaatt 3167973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 406 - 513
Target Start/End: Original strand, 24183940 - 24184047
Alignment:
Q  406 agcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatgg 505  Q
    ||||||| | ||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||   |||||||||    
T  24183940 agcattgttgtttatttagagagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatgg 24184039  T
Q  506 tgtgtaat 513  Q
    ||||||||    
T  24184040 tgtgtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 425 - 514
Target Start/End: Original strand, 35457389 - 35457477
Alignment:
Q  425 agagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||||||||| ||||||| |||||||||| |||| ||||||||||||| ||||  |||||||||||| ||||||||||||||||||    
T  35457389 agagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaatt 35457477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 19945865 - 19945755
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||| |||||||||||||| || ||||||| || |||| || ||   ||||||||||| | ||||||||||||| || | |||||||    
T  19945865 agagcattgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaat 19945766  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  19945765 ggtgtgtaatt 19945755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 514
Target Start/End: Original strand, 27407404 - 27407499
Alignment:
Q  419 atctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||||| |||||||| |||| ||||||||||| ||||| |||||||||||| | ||||  |||||||||| |||| ||||| |||||||||    
T  27407404 atctagagagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaatt 27407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 31645229 - 31645128
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatc-aagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaa 512  Q
    ||||||||||||||||||||||||| |||||||| || |||| || | |||||||||||||| | ||||| ||||||||||  || |||||| |||||||    
T  31645229 tatttatctagagagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaa 31645130  T
Q  513 tt 514  Q
    ||    
T  31645129 tt 31645128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 514
Target Start/End: Original strand, 4434270 - 4434377
Alignment:
Q  410 ttgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaa---agaaggtaatggt 506  Q
    |||||||||||  |||||| |||||| || |||| |||||||||||||  ||  ||||||||||| | ||||| || |||||||   || ||||||||||    
T  4434270 ttgctatttattgagagagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggt 4434369  T
Q  507 gtgtaatt 514  Q
    ||||||||    
T  4434370 gtgtaatt 4434377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 14131134 - 14131168
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaa 438  Q
    |||| ||||||||||||||||||||||||||||||    
T  14131134 agaggattgctatttatctagagagtttttatcaa 14131168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 511
Target Start/End: Original strand, 27007174 - 27007243
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgta 511  Q
    ||||||||||||  || |||||||| ||||||| | ||||| |||||||||| | ||||||| |||||||    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgta 27007243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 403 - 514
Target Start/End: Original strand, 35412992 - 35413103
Alignment:
Q  403 gagagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaa 502  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| | ||||||    
T  35412992 gagagaattgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaa 35413091  T
Q  503 tggtgtgtaatt 514  Q
    | ||||||||||    
T  35413092 tagtgtgtaatt 35413103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 10061569 - 10061669
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    ||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||| | ||||||| |||||||| | |||||||| ||||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaat 10061668  T
Q  514 t 514  Q
    |    
T  10061669 t 10061669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 420 - 514
Target Start/End: Original strand, 26469927 - 26470021
Alignment:
Q  420 tctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||| |||| | | |||||||||||| |||||||||||||||    
T  26469927 tctagagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaatt 26470021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 29657331 - 29657441
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||| |||||||||||||||| ||||||||| ||||  |||||||||||| |||||||||||||||| | ||||| || ||||||||| |||||||    
T  29657331 agagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaat 29657430  T
Q  504 ggtgtgtaatt 514  Q
    | | |||||||    
T  29657431 gatatgtaatt 29657441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 43537288 - 43537176
Alignment:
Q  405 gagcattgctatttatctagagagttttt---atcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggta 501  Q
    |||||||| ||||||||||||||||||||   ||||| |||| ||||||||||||| ||| |||||||||||| | ||||| |||||||||| | |||||    
T  43537288 gagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggta 43537189  T
Q  502 atggtgtgtaatt 514  Q
    |||||||||||||    
T  43537188 atggtgtgtaatt 43537176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 404 - 490
Target Start/End: Original strand, 21540041 - 21540127
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaat 490  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||| || ||| |||||||||||| | ||||| |||||||    
T  21540041 agagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaat 21540127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 23906747 - 23906637
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||||||||||||||||| || ||||||||| |||| |||||||||| || ||| |||||||||||| | ||||| |  |||||||   |||||||    
T  23906747 agagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaat 23906648  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  23906647 ggtgtgtaatt 23906637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 504
Target Start/End: Original strand, 49313575 - 49313674
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||||||||||||| | |||||||||||||| |||| |||||||||| || ||||  |||||||||| | ||| | ||||||||||||||| |||||    
T  49313575 gagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaaagaagataatg 49313674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 35149795 - 35149695
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    ||||||||||||||||||||||||| |||||||||||||||  | | |||||||||||||| | |||||||  ||||||| | || ||||| ||| ||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataat 35149696  T
Q  514 t 514  Q
    |    
T  35149695 t 35149695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 514
Target Start/End: Original strand, 11469994 - 11470101
Alignment:
Q  408 cattgctatttatctagagagttttt-atcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggt 506  Q
    ||||| |||||||  ||||||||||| || || |||||||||||||||  | | |||||||||||||| | ||||| |||||||||| | |||||||| |    
T  11469994 cattgttatttattaagagagttttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgat 11470093  T
Q  507 gtgtaatt 514  Q
    ||||||||    
T  11470094 gtgtaatt 11470101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 48852610 - 48852680
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||| |||||||||||||||||||||| || |||||||||| |||| || | || |||||||||||    
T  48852610 agagcattgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaattt 48852680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 13085171 - 13085137
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaa 438  Q
    ||||||||| |||||||||||||||||||||||||    
T  13085171 agagcattgttatttatctagagagtttttatcaa 13085137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 35360380 - 35360425
Alignment:
Q  409 attgctatttatctagagagtttttatcaataatttatcaagaaaa 454  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  35360380 attgttatttatttagagagattttatcaataattgatcaagaaaa 35360425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 410 - 514
Target Start/End: Complemental strand, 32871888 - 32871784
Alignment:
Q  410 ttgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtg 509  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||| | ||||||| |||||    
T  32871888 ttgctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtg 32871789  T
Q  510 taatt 514  Q
    |||||    
T  32871788 taatt 32871784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 6784842 - 6784733
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||| |||||||||||| | ||||| |||||||||| | || |||||    
T  6784842 gagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatg 6784743  T
Q  505 gtgtgtaatt 514  Q
    ||||||||||    
T  6784742 gtgtgtaatt 6784733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 2130633 - 2130523
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||| ||||||||||||||||||| || || |||||||||||||||  | |||||||||||||||| | ||||| |||||||||||| |||| ||    
T  2130633 agagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgat 2130534  T
Q  504 ggtgtgtaatt 514  Q
     ||||||||||    
T  2130533 tgtgtgtaatt 2130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 511
Target Start/End: Original strand, 34713468 - 34713575
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||  || ||||| |||||||||| | ||||| || ||||||| | | |||||    
T  34713468 agagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaat 34713567  T
Q  504 ggtgtgta 511  Q
    ||||||||    
T  34713568 ggtgtgta 34713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 514
Target Start/End: Original strand, 28867151 - 28867262
Alignment:
Q  403 gagagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaa 502  Q
    |||||||||| |||||||||| |||| ||||||||| |||| || ||||||| || |||| ||||||||||| | |||||  ||||||||||| ||||||    
T  28867151 gagagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaa 28867250  T
Q  503 tggtgtgtaatt 514  Q
    | || |||||||    
T  28867251 tagtatgtaatt 28867262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 6519233 - 6519317
Alignment:
Q  430 ttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||| |||| |||||||||| || |||  ||||||||||| | ||||| || ||||||||| | |||||| |||||||||    
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaatt 6519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 503
Target Start/End: Original strand, 11301808 - 11301902
Alignment:
Q  409 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||||||| |||||| |||||||||| |||| |||| |||||||| |||  ||||| ||||| | ||||  || |||||||  ||||||||    
T  11301808 attgctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaat 11301902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 25493786 - 25493896
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||| |||||||||||| |  |||| | |||||||||| |||||||    
T  25493786 agagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaat 25493885  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  25493886 ggtgtgtaatt 25493896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 30071739 - 30071848
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||| |||||||||||||||||| |||||  ||||||||  ||||||| ||    
T  30071739 gagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtg 30071838  T
Q  505 gtgtgtaatt 514  Q
    ||||||||||    
T  30071839 gtgtgtaatt 30071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 40519146 - 40519255
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| | || |||||||||||||||| | |||||| ||||||| | | |||||||    
T  40519146 agagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatc-agggaggtaat 40519244  T
Q  504 ggtgtgtaatt 514  Q
    | |||||||||    
T  40519245 gatgtgtaatt 40519255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 3040400 - 3040291
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    |||||||| |||||| |||||||||||||||||| ||||||||||||||| || |||| ||||||||||| | || ||  | ||||||| | ||||||||    
T  3040400 gagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatg 3040301  T
Q  505 gtgtgtaatt 514  Q
    ||||||||||    
T  3040300 gtgtgtaatt 3040291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 30735461 - 30735352
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||||||||||||||||| ||||||||| || ||| ||||||||||| || |||| ||||||||||| | ||||| |||||||||| | ||||||||    
T  30735461 gagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatg 30735362  T
Q  505 gtgtgtaatt 514  Q
     || ||||||    
T  30735361 ctgggtaatt 30735352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 30701008 - 30700901
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||| ||||||||||||||  |||||||||| ||| ||| ||||||| || |||| ||||||||||| | |||||||| |||| || | ||||||||    
T  30701008 gagcatttctatttatctagag--tttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatg 30700911  T
Q  505 gtgtgtaatt 514  Q
     |||||||||    
T  30700910 ttgtgtaatt 30700901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 24402009 - 24402080
Alignment:
Q  406 agcattgctatttatctagagagttttt---atcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||||||||| ||||||||||||   ||||| |||||||||||||||| | |||||||| |||||||    
T  24402009 agcattgctatttatttagagagttttttttatcaagaatttatcaagaaaagatctcaaccaaataaattt 24402080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 21259185 - 21259294
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt-atgatttgacggaaatcaaagaaggtaa 502  Q
    ||||||||  ||||||||||||||||||||||||| |||| || |||||||||| | | | |||||||||| |||  | |||||||||||| | ||||||    
T  21259185 agagcatttatatttatctagagagtttttatcaagaattgataaagaaaaggtttaagctaattaaatttcatg-ctggacggaaatcaagggaggtaa 21259283  T
Q  503 tggtgtgtaatt 514  Q
    ||| ||||||||    
T  21259284 tgg-gtgtaatt 21259294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 35875876 - 35875810
Alignment:
Q  408 cattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||||||| ||||||| ||||||||| |||| |||||| |||||| | | ||||||||||||    
T  35875876 cattgctatttatttagagagattttatcaagaattgatcaaggaaaggtttaagccaattaaattt 35875810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 293
Target Start/End: Complemental strand, 28432929 - 28432798
Alignment:
Q  162 ttgtttgacatgtattcatacagtaggattttttcgtctcctttaatgcaatagcccctaagcctaacaagatttcgatgttgaagtttggcaatcaaaa 261  Q
    ||||||| |||||||||||| |||| || | |||| ||||||| ||||||| | ||  ||| | ||||||||||||||||||| | ||| |||  ||| |    
T  28432929 ttgtttggcatgtattcatagagtaagagtctttcatctccttcaatgcaacaaccaataaccttaacaagatttcgatgttgcaatttagcacacaata 28432830  T
Q  262 caatctcatttttaaattcttgcaagccttga 293  Q
      |  |||||||||||||||| ||| ||||||    
T  28432829 tgacttcatttttaaattctttcaatccttga 28432798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 41545383 - 41545492
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||| |||||||||||||||||||  ||||| |||||||||||||||||  |||||||||||||||| | ||||| | |||||| |||||||||||     
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaatt 41545482  T
Q  505 gtgtgtaatt 514  Q
    ||||||||||    
T  41545483 gtgtgtaatt 41545492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 409 - 514
Target Start/End: Original strand, 19482490 - 19482595
Alignment:
Q  409 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgt 508  Q
    ||||||||||||||||||||||||  | || |||||||||||||||  | |||||||||||||||| | ||||| |||||||||| | | ||||||||||    
T  19482490 attgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgt 19482589  T
Q  509 gtaatt 514  Q
    ||||||    
T  19482590 gtaatt 19482595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 25817646 - 25817742
Alignment:
Q  418 tatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||||  ||||||||| |||| ||||||||||||| ||| |||||||||||| | ||||||||||||||||   ||||||||||||||||||    
T  25817646 tatctagagacattttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaatt 25817742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 408 - 514
Target Start/End: Complemental strand, 42504328 - 42504225
Alignment:
Q  408 cattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtg 507  Q
    |||||||||||||||||||||||||||| |||   | ||||||||||| | |||||||||||||||| | ||||| |||||||||| | |||||||| ||    
T  42504328 cattgctatttatctagagagtttttatgaat---tgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatg 42504232  T
Q  508 tgtaatt 514  Q
    |||||||    
T  42504231 tgtaatt 42504225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 29065381 - 29065309
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||||||| || |||| ||||||||||| | |||||||||||||||| | ||||||||||||||||||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaatt 29065309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 37762772 - 37762884
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaagg--tatcaaccaattaaatttatgatttgacggaaatcaaagaaggta 501  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||| |     ||||||||||||||| | |||||||| || |||||| |  ||    
T  37762772 agagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaata 37762871  T
Q  502 atggtgtgtaatt 514  Q
    ||| |||||||||    
T  37762872 atgatgtgtaatt 37762884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 494
Target Start/End: Original strand, 16528530 - 16528620
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaa 494  Q
    |||| |||||||||||||||||||| ||||||  | |||| ||||| | ||||| ||| |||||||||||| | ||||| |||||||||||    
T  16528530 agagtattgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaa 16528620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 474
Target Start/End: Original strand, 41485716 - 41485774
Alignment:
Q  416 tttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||||||||||||||||| |||| ||||||||||||| | | ||||||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattt 41485774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 51304429 - 51304330
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    |||||||||||||||||||||| || ||| ||| |||||||  |  ||| ||||||||||| | |||||||||||||||||| || |||||| ||| |||    
T  51304429 tatttatctagagagtttttattaagaatatat-aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaat 51304331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 42108826 - 42108739
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatca 492  Q
    |||| ||| |||||||||||| | |||||||||| |||| |||||||||| || ||| |||||||||||| | ||| |||| ||||||    
T  42108826 gagcgttgttatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttattagacgaaaatca 42108739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 24060543 - 24060653
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||| |||||||||| ||| |||||||||| |||| |||||||||| || | | | |||||||||| | ||| |   |||||||| | || ||||    
T  24060543 agagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataat 24060642  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  24060643 ggtgtgtaatt 24060653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 514
Target Start/End: Original strand, 5288507 - 5288599
Alignment:
Q  422 tagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||| |||||| || |||| || ||||||| || ||| |||||||||||| | ||||| || ||||||| | || |||||||||||||||    
T  5288507 tagagagattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaatt 5288599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 13218423 - 13218513
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaag 495  Q
    ||||||||||||||||| | |||||||||||| || ||||||| |||||||||| ||   ||||||||||| | ||||| | ||||| ||||    
T  13218423 agagcattgctatttattt-gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttgtcagaaattaaag 13218513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 36438141 - 36438195
Alignment:
Q  228 acaagatttcgatgttgaagtttggcaatcaaaacaatctcatttttaaattctt 282  Q
    ||||||||||  ||||||||||| | ||||||||||| |||||||||||| ||||    
T  36438141 acaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactctt 36438195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 38585229 - 38585119
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||| |||| ||||||| ||||||||||||||||| ||||||||||||||| || ||||  |||||||||| | ||||| |||||||||||| |||||||    
T  38585229 agagtattgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaat 38585130  T
Q  504 ggtgtgtaatt 514  Q
     ||||||||||    
T  38585129 tgtgtgtaatt 38585119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 29414352 - 29414459
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||||| || ||| |||||||||||| | ||||| || ||||||| ||||||||||    
T  29414352 gagcattgctatttatctagag--tttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatg 29414449  T
Q  505 gtgtgtaatt 514  Q
    |||| |||||    
T  29414450 gtgtttaatt 29414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 24068256 - 24068148
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    |||||||||||||||||||||||| ||||||||| |||| ||| |||||| || ||| |||||||||||| | ||||| |  ||||||||| |||| |||    
T  24068256 gagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttg-ccaaaatcaaaggaggtgatg 24068158  T
Q  505 gtgtgtaatt 514  Q
    ||||||||||    
T  24068157 gtgtgtaatt 24068148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 5718595 - 5718478
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatca-ac-------caattaaatttatgatttgacggaaatcaaaga 496  Q
    |||||||| ||||||||| ||||| ||||||||| |||| ||||||||||||| ||| ||       ||||||||||||| ||||| |||||||||| ||    
T  5718595 gagcattggtatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaagga 5718496  T
Q  497 aggtaatggtgtgtaatt 514  Q
    ||||||||||||||||||    
T  5718495 aggtaatggtgtgtaatt 5718478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 29543753 - 29543683
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||  | ||||||||||||||||    
T  29543753 agagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaattt 29543683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 514
Target Start/End: Original strand, 26415557 - 26415629
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| |||  || ||||| |||||||||    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaatt 26415629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Original strand, 35393710 - 35393756
Alignment:
Q  407 gcattgctatttatctagagagtttttatcaataatttatcaagaaa 453  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||    
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaa 35393756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 26415530 - 26415564
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaa 438  Q
    |||||||||||||||||||||||||||||||||||    
T  26415530 agagcattgctatttatctagagagtttttatcaa 26415564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 36947368 - 36947296
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatt--tatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||| ||||||||||||||| ||||||||| ||||  ||  || |||| ||||||| |||||||||||    
T  36947368 agagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaattt 36947296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 43063955 - 43063883
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||| ||||||| |||  ||||||||||||| |||||  | |||||||| ||||||||| ||| |||||    
T  43063955 tttatcaaaaaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataatt 43063883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 21882910 - 21882800
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||| |||||| || |||| || |||||||| | ||| |||||||||||| | ||||| |||||||||| | |||||||    
T  21882910 agagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaat 21882811  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  21882810 ggtgtgtaatt 21882800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 20125557 - 20125667
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||| |||||||||||||||| ||||||||| |||| |||||||||| || ||| |||||||||||| | | ||| | ||||| ||||||| ||||    
T  20125557 agagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataat 20125656  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  20125657 ggtgtgtaatt 20125667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 46297580 - 46297690
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||| ||| || ||||| | ||||| || ||||||| | || ||||    
T  46297580 agagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaat 46297679  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  46297680 ggtgtgtaatt 46297690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 23611890 - 23611801
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaa 493  Q
    |||| ||| ||||||||||||||||||||||| || ||||||||||||||| || ||||| |||||||||| | ||||||||||||||||    
T  23611890 agagaattactatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaa 23611801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 24250595 - 24250485
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||| |||||| |||| ||||||||| |||| ||||||||||| | | | |||||| ||||| | ||||| |||||||||| | |||||||    
T  24250595 agagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaat 24250496  T
Q  504 ggtgtgtaatt 514  Q
    ||| |||||||    
T  24250495 ggtttgtaatt 24250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 514
Target Start/End: Original strand, 22631449 - 22631557
Alignment:
Q  406 agcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatgg 505  Q
    ||||||| |||||||||| |||  |||||| || |||| ||||||||||| | ||| |||||||||||| | ||||| |||||||||||| || |||| |    
T  22631449 agcattgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatag 22631548  T
Q  506 tgtgtaatt 514  Q
    |||||||||    
T  22631549 tgtgtaatt 22631557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 508
Target Start/End: Complemental strand, 23730640 - 23730540
Alignment:
Q  408 cattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtg 507  Q
    |||||||||||||| |||||| ||||||||| |||| |||||||||| || ||| | |||||||||  | ||||| ||||||||||   |||||||||||    
T  23730640 cattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatggtg 23730541  T
Q  508 t 508  Q
    |    
T  23730540 t 23730540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 8123658 - 8123728
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||||||||||||||||||| ||||||||  |||| |||||||||| || |||  |||||||||||    
T  8123658 agagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaattt 8123728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 48154943 - 48154850
Alignment:
Q  413 ctatttatctagagagtttttatcaataatttat-caagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatgg 505  Q
    |||||||| |||||||||||||||||||||| ||  || |||| || ||||||||| |||||||| ||| | || |||||| || |||||||||    
T  48154943 ctatttatttagagagtttttatcaataattgataaaaaaaaaagtttcaaccaatgaaatttattattggccgaaaatcataggaggtaatgg 48154850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 1985032 - 1985083
Alignment:
Q  463 ccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||||||| | ||||| |||||||||| |||||||||||| |||||||    
T  1985032 ccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaatt 1985083  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 46413849 - 46413774
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatt---tgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    ||||||||||||| || |||||||||||||||| | |||   || |||||||||| | |||||||| |||||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaatt 46413774  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 19511387 - 19511487
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    ||||||||| ||||| ||||||||| |||| || ||||||| || | | |||||||||||||| ||||   ||||||||| | || |||| ||| |||||    
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaat 19511486  T
Q  514 t 514  Q
    |    
T  19511487 t 19511487  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 46413874 - 46413842
Alignment:
Q  406 agcattgctatttatctagagagtttttatcaa 438  Q
    |||||||||||||||||| ||||||||||||||    
T  46413874 agcattgctatttatctatagagtttttatcaa 46413842  T

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Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 1632776 - 1632885
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||| |||||||||||||||||| |||||||||| |||| |||||||||| || ||||| |||||||||| | ||||  |||||||||||| |||||||    
T  1632776 agagctttgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaat 1632874  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  1632875 ggtgtgtaatt 1632885  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 442 - 514
Target Start/End: Original strand, 26442954 - 26443026
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||||||||||| |||||||||||||||| | ||||| |||||||||| | ||||||||||||||||||    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaatt 26443026  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 413 - 513
Target Start/End: Complemental strand, 40840780 - 40840680
Alignment:
Q  413 ctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaa 512  Q
    |||||||| |||||| ||||||||||  ||||||||| |||| || ||||| |||||||||||| ||||| |||||||||||| |||||||| ||| |||    
T  40840780 ctatttatttagagaatttttatcaaatatttatcaaaaaaatgtttcaactaattaaatttattatttggcggaaatcaaaggaggtaatgatgtataa 40840681  T
Q  513 t 513  Q
    |    
T  40840680 t 40840680  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 482
Target Start/End: Complemental strand, 45853075 - 45852997
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttg 482  Q
    ||||||||| |||||||||| |||| ||||||||| |||| |||||||||| || |||||||||||||||||| |||||    
T  45853075 agagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttg 45852997  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 514
Target Start/End: Complemental strand, 48897821 - 48897711
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||| |||| || ||| | | |||||||| | ||||| || ||||||| | |  ||||    
T  48897821 agagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataat 48897722  T
Q  504 ggtgtgtaatt 514  Q
    |||||||||||    
T  48897721 ggtgtgtaatt 48897711  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 34905814 - 34905923
Alignment:
Q  405 gagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatg 504  Q
    ||||||||||||||||||||| || ||||||||| |||| || ||||||| || ||| ||| |||||||| | ||||| |  ||||||||| ||||||||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatg 34905913  T
Q  505 gtgtgtaatt 514  Q
     ||| |||||    
T  34905914 atgtataatt 34905923  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 18272066 - 18271994
Alignment:
Q  442 tttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaatt 514  Q
    |||||||||||||  | |||||||||||||||| | ||||| |||||||||| | ||||||||||||||||||    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaatt 18271994  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 10593591 - 10593531
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||| ||||||| ||||||||| |||||||| |||||| || ||||||||||||||||    
T  10593591 tatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaattt 10593531  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 3169382 - 3169319
Alignment:
Q  409 attgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||||||| | | ||||||||||||    
T  3169382 attgctatttatctagag--tttttatcaagaattgatcaagaaaaggtttaagccaattaaattt 3169319  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 2671895 - 2671940
Alignment:
Q  429 tttttatcaataatttatcaagaaaaggtatcaaccaattaaattt 474  Q
    |||||||||| |||| ||||||||||||| ||| ||||||||||||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaattt 2671940  T

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Target: scaffold0148 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 334
Target Start/End: Original strand, 26098 - 26280
Alignment:
Q  152 gtccaagctcttgtttgacatgtattcatacagtaggattttttcgtctcctttaatgcaatagcccctaagcctaacaagatttcgatgttgaagtttg 251  Q
    ||||| ||||||||| | ||| || ||||| || || |||||||| |||||||| | ||| |||||||  |   ||||||| |||||||||||||||||     
T  26098 gtccaggctcttgttaggcatatactcataaagcagaattttttcctctccttttacgcagtagccccgtaatttaacaaggtttcgatgttgaagttta 26197  T
Q  252 gcaatcaaaacaatctcatttttaaattcttgcaagccttgagttgaaacactcgaaagcctcttgatagcaatctcttgacc 334  Q
    ||||||||||||| |||||| |||||||| || |||||||| | ||||||| | ||||| ||||| |  ||||| ||||||||    
T  26198 gcaatcaaaacaacctcattcttaaattcctgtaagccttgtgatgaaacatttgaaagtctctttactgcaatttcttgacc 26280  T

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Target: scaffold0018 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 414 - 514
Target Start/End: Complemental strand, 70056 - 69956
Alignment:
Q  414 tatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaatggtgtgtaat 513  Q
    ||||||||||||||||||||||| | |||| ||||||||||||| ||| |||||||||||| | ||| | |||||||||| | || |||||| |||||||    
T  70056 tatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaat 69957  T
Q  514 t 514  Q
    |    
T  69956 t 69956  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 18601 - 18711
Alignment:
Q  404 agagcattgctatttatctagagagtttttatcaataatttatcaagaaaaggtatcaaccaattaaatttatgatttgacggaaatcaaagaaggtaat 503  Q
    |||||||||||||||||||| |||| |||||| || |||| |||||||||| || | |  ||||||||||| | ||||| || |||| || | || ||||    
T  18601 agagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataat 18700  T
Q  504 ggtgtgtaatt 514  Q
    |||| ||||||    
T  18701 ggtgagtaatt 18711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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