View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_10 (Length: 410)
Name: NF9169_high_10
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_10 |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 41 - 397
Target Start/End: Complemental strand, 20238950 - 20238594
Alignment:
| Q |
41 |
agcttcctctaaaatcaaccccaaaacaatgtagtgactgtggtacaataattcaatgtagccgaagacattggctttccacgtacattgcacattttat |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238950 |
agcttcctctaaaatcaaccccaaaacaatgtagtgactgtggtacaataattcaatgtagccgaagacattggctttccacgtacattgcacattttat |
20238851 |
T |
|
| Q |
141 |
aaatcttcattgcacctctatgattgcaaatcaaccaaattccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238850 |
aaatcttcattgcacctctatgattgcaaatcaaccaaattccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgcc |
20238751 |
T |
|
| Q |
241 |
actattaaggcacaagaccctcctgtttaccttgtcatcaaacgttgttcccccaacgacaataccacaatcaacagcaccttccaaatcaatcttaaca |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238750 |
actattaaggcacaagaccctcctgtttaccttgtcatcaaacgttgttcccccaacgacaataccacaatcaacagcaccttccaaatcaatcttaaca |
20238651 |
T |
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| Q |
341 |
cccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacacca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20238650 |
cccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacacca |
20238594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 41 - 397
Target Start/End: Complemental strand, 22132934 - 22132578
Alignment:
| Q |
41 |
agcttcctctaaaatcaaccccaaaacaatgtagtgactgtggtacaataattcaatgtagccgaagacattggctttccacgtacattgcacattttat |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132934 |
agcttcctctaaaatcaaccccaaaacaatgtagtgactgtggtacaataattcaatgtagccgaagacattggctttccacgtacattgcacattttat |
22132835 |
T |
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| Q |
141 |
aaatcttcattgcacctctatgattgcaaatcaaccaaattccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132834 |
aaatcttcattgcacctctatgattgcaaatcaaccaaattccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgcc |
22132735 |
T |
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| Q |
241 |
actattaaggcacaagaccctcctgtttaccttgtcatcaaacgttgttcccccaacgacaataccacaatcaacagcaccttccaaatcaatcttaaca |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132734 |
actattaaggcacaagaccctcctgtttaccttgtcatcaaacgttgttcccccaacgacaataccacaatcaacagcaccttccaaatcaatcttaaca |
22132635 |
T |
|
| Q |
341 |
cccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacacca |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22132634 |
cccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacacca |
22132578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 21972604 - 21972562
Alignment:
| Q |
355 |
ttgtcatcaaaagccatagacaacactgaattctacaacacca |
397 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
21972604 |
ttgtcatcaaaagccataggcaacaccaaattctacaacacca |
21972562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 14458 - 14394
Alignment:
| Q |
181 |
tccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgccactat |
245 |
Q |
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|||||||||| ||| || ||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
14458 |
tccatggcttgctcgaatattttctttttctctatccttgtttgtttcctctattttgccactat |
14394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 4729 - 4820
Alignment:
| Q |
303 |
taccacaatcaacagcaccttccaaatcaatcttaacacccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaaca |
394 |
Q |
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||||||| ||| ||||||||||||| ||||| | ||||| || ||| |||||||||||||||||| || |||||| ||||||||||||| |
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| T |
4729 |
taccacagccaatagcaccttccaaactaatctcatgaccctcctttcttccttgtcatcaaaagccacaggcaacaccgaattctacaaca |
4820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 47217 - 47311
Alignment:
| Q |
303 |
taccacaatcaacagcaccttccaaatcaatcttaacacccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacacca |
397 |
Q |
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|||||||| ||| ||||||| |||||||||| || || || |||||| | |||||||||||||||| | |||||| |||||||||||||||| |
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| T |
47217 |
taccacaagcaatagcacctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacacca |
47311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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