View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_15 (Length: 323)
Name: NF9169_high_15
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 44016481 - 44016791
Alignment:
| Q |
1 |
taattggattgttcatagtcacata--gaagtagcacatgtaattgattattagaatataccttgagttaacaaagcaacattgtcattcaaaatttcat |
98 |
Q |
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| T |
44016481 |
taattggattgttcatagtcacatatagaagtagaacatgtaattgattattagaatataccttgagttaacaaagcaacgttgtcattcaaaacttcat |
44016580 |
T |
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| Q |
99 |
caatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaattaaatgaacaatataggttaaaaatcaatgg |
198 |
Q |
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| T |
44016581 |
caatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaattaaatgaacaatataggttaaaaatcaatgg |
44016680 |
T |
|
| Q |
199 |
gtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttgcaaatgtctcggttgggaatggtttggcc |
298 |
Q |
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| T |
44016681 |
gtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttgcaaatgtctcggttgggaatggtttggcc |
44016780 |
T |
|
| Q |
299 |
attgatgttag |
309 |
Q |
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| T |
44016781 |
attgatgttag |
44016791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 41 - 309
Target Start/End: Complemental strand, 44030056 - 44029788
Alignment:
| Q |
41 |
attgattattagaatataccttgagttaacaaagcaacattgtcattcaaaatttcatcaatttcctccaactcattccatctagcatatgcttctctca |
140 |
Q |
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| T |
44030056 |
attgattatttgaacataccttgagttaacaaagcaacgttgtcattcaaaacttcatcaatttcctccaactcattccatctagcatatgcttctctca |
44029957 |
T |
|
| Q |
141 |
catagttttgtatgtagctctgcaaattaaatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtat |
240 |
Q |
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| T |
44029956 |
catagttttgtatgtagctctgcaaattaaatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtat |
44029857 |
T |
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| Q |
241 |
aaataaataaatgtaccttgtccatgttgcaaatgtctcggttgggaatggtttggccattgatgttag |
309 |
Q |
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| T |
44029856 |
aaataaataaatgtaccttgtccatgttgcaaatgtctcggttgggaatggtttggccattgatgttag |
44029788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 31241226 - 31241304
Alignment:
| Q |
43 |
tgattattagaatataccttgagttaacaaagcaacattgtcattcaaaatttcatcaatttcctccaactcattccat |
121 |
Q |
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| T |
31241226 |
tgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccat |
31241304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 31232269 - 31232334
Alignment:
| Q |
56 |
ataccttgagttaacaaagcaacattgtcattcaaaatttcatcaatttcctccaactcattccat |
121 |
Q |
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|||||||| ||||||||||||| || ||||| |||| ||||||||||||||||||||| |||| |
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| T |
31232269 |
ataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcctccaactcatgccat |
31232334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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