View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_17 (Length: 316)
Name: NF9169_high_17
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_17 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 48823685 - 48823981
Alignment:
| Q |
14 |
agagcaaacaaagtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48823685 |
agagcaaacaaagtttagagagttcatctacaatgtataagtacttaaaagcaaaattacatgacaatactcaaacaagtcaaggggttaagccaccaat |
48823784 |
T |
|
| Q |
114 |
gataattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaattgatactgccttgtta |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
48823785 |
gataattaaaaacaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcatctcttgtccactaattcatcaattgatagtgccttgtta |
48823884 |
T |
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| Q |
214 |
ttaaaaatcatattattatgttttttcca--------taacactcaagtgtacgttagccaaattaaaataagagtcgaacgaaagcgttcatgatg |
302 |
Q |
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||||||||||||||||||| || |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48823885 |
ttaaaaatcatattattatattctttccatatataattaacacccaagtatacgttagccaaattaaaataagagtcgaacgaaagcgttcgtgatg |
48823981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 284
Target Start/End: Original strand, 21547964 - 21548160
Alignment:
| Q |
89 |
caagccaaggggttaagccaccaa---tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccac |
185 |
Q |
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| T |
21547964 |
caagccaagggattaagccgccaacaatgatagcgaaaagcaaaaattacatgtttcgccttcagccaccaaaaagaaagtagcttcacct--tatccac |
21548061 |
T |
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| Q |
186 |
taattcatcaattgatactgccttgttattaaaaatcatattattatgttttttccataacactcaagtgtacgttagccaaattaaaataagagtcga |
284 |
Q |
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| T |
21548062 |
taatttatcaatcgataatgccttgtcgttaaaaattttgttattacgttctttccataacacccaagtgcacgttagccaaattaaaataagaatcga |
21548160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 24433831 - 24433987
Alignment:
| Q |
16 |
agcaaacaaagtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaa--- |
112 |
Q |
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||||||||| ||||| | |||||| |||||| || || | || ||||||||||||||||| |||||| |||||||||||| | |||| ||||||| |
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| T |
24433831 |
agcaaacaatgtttacaaagttcacctacaagttacaagtgctaaaaagcaaaattacatggcaatacccaaacaagccaatgtattaaaccaccaacaa |
24433930 |
T |
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| Q |
113 |
tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagct |
170 |
Q |
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| T |
24433931 |
tgataactaaaagcaaaaattatatgtttcgtcttcagcca-caaaaagaaagtagct |
24433987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 6041315 - 6041492
Alignment:
| Q |
16 |
agcaaacaaagtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaatga |
115 |
Q |
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||||||||| ||||| |||||||| |||| || || | ||||||||||||||||||| |||||| |||| |||||||||| |||||||||||| | |
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| T |
6041315 |
agcaaacaatgtttatagagttcacatacaggttacaagtgctgaaaagcaaaattacatagcaatacccaaataagccaagggattaagccaccaacaa |
6041414 |
T |
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| Q |
116 |
taattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaat |
197 |
Q |
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| T |
6041415 |
taat--agcgcaaaaattacatgtttccccttcaaccaccaaaaagaaagtggctttac--cttgtctgctaattcatcaat |
6041492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 39718380 - 39718194
Alignment:
| Q |
11 |
cagagagcaaacaaagtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccacc |
110 |
Q |
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|||||| ||||||||||||| | ||||||||||| ||||| || |||||||||| ||||||||| | |||| |||||| ||||| || |||||||||| |
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| T |
39718380 |
cagagaacaaacaaagtttacaaagttcatctactatgtacaagtactgaaaagaaaaattacacggtgatacccaaacatgccaaaggattaagccacc |
39718281 |
T |
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| Q |
111 |
aa---tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaa |
196 |
Q |
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| T |
39718280 |
aacagtgataactaaaagcaaaatttacatgtttcgacttcagccaccaaaaaaaaagtaacttcac--cttgtccactaattcatcaa |
39718194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 281
Target Start/End: Complemental strand, 24869851 - 24869632
Alignment:
| Q |
63 |
agcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaa---tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaa |
159 |
Q |
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|||||||||||||| |||| ||||||| ||||||| |||||||||||| |||||| ||||||||||||||| || |||| ||||||||||| |||| |
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| T |
24869851 |
agcaaaattacatgctaatatccaaacaaaccaagggattaagccaccaacaatgataactaaaagcaaaaattacatatttctccttcagccacaaaaa |
24869752 |
T |
|
| Q |
160 |
agagagtagcttcacctcttgtccactaattcatcaattgatactgccttgttattaaaaatcatattattatgttttttccataacactcaagtgtacg |
259 |
Q |
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||| || ||||| || | ||||||||||||||| ||| || | |||||||||||||||||||| ||||| ||| |||||||| ||| ||| || ||| |
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| T |
24869751 |
agatagcagcttaactt--tgtccactaattcataaatcgaagcggccttgttattaaaaatcatgttatttcgttctttccatatcacccaaatgcacg |
24869654 |
T |
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| Q |
260 |
ttagccaaattaaaataagagt |
281 |
Q |
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||||||| |||| || |||||| |
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| T |
24869653 |
ttagccatattacaagaagagt |
24869632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 21515736 - 21515808
Alignment:
| Q |
11 |
cagagagcaaacaaagtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatac |
83 |
Q |
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|||||| ||||||||||||| |||||||| | | |||||| || ||||||||| |||||||||||| |||||| |
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| T |
21515736 |
cagagaacaaacaaagtttacagagttcaccaataatgtacaagtactgaaaaacaaaattacatggcaatac |
21515808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 23653 - 23554
Alignment:
| Q |
143 |
gccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaattgatactgccttgttattaaaaatcatattattatgttttttcca |
242 |
Q |
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||||||||||||||||||||||||||||| || |||||||| | | || ||| || ||| ||||||||||||||||| | ||||| |||||||||| |
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| T |
23653 |
gccttcagccaccaaaaagagagtagcttaac--gttgtccaccagtccagaaatagacactaccttgttattaaaaatcttgttattgcgttttttcca |
23556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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