View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9169_high_2 (Length: 802)
Name: NF9169_high_2
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 18 - 795
Target Start/End: Complemental strand, 42341605 - 42340825
Alignment:
| Q |
18 |
ttaccattcccaacataccctgaactcgaaggttctccaactgctccacctccctgtgccaccgtttggtacggtggcgcaacaacgtttagattcccgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341605 |
ttaccattcccaacataccctgaactcgaaggttctccaactgctccacctccctgtgccaccgtttggtacggtggcgcaacaacgtttagattcccgc |
42341506 |
T |
|
| Q |
118 |
cgccgccaatagcaaatgaagcagcctgaaccattgtagagttgttgttcggatacactgcagcgtaatgctgctgc---ggccggtgagatgacactgc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42341505 |
cgccgccaatagcaaatgaagcagcctgagccattgtagagttgttgttcggatacactgcggcgtaatgctgctgctgcggccggtgagatgacactgc |
42341406 |
T |
|
| Q |
215 |
tgctgcggtaggtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgcca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341405 |
tgctgcggtaggtggtggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgcca |
42341306 |
T |
|
| Q |
315 |
aaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctcagaccaaacttgttcca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341305 |
aaagtcggctgtcgaggggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctcagaccaaacttgttcca |
42341206 |
T |
|
| Q |
415 |
cagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagctgcagacaagttattgtt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341205 |
cagttttcctgcagagaggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagctgcagacaagttattgtt |
42341106 |
T |
|
| Q |
515 |
gttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttcatggatccgaaattcttg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341105 |
gttgctgttattattgttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttcatggatccgaaattcttg |
42341006 |
T |
|
| Q |
615 |
ccgctatcacagaggctgtgttggaactcgtcaagggtgagtgagtatatggatgacgattgccttccgagcgatgaagaaatgacattgttgacgtcat |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341005 |
ccgctatcacagaggctgtgttggaactcgtcgagggtgagtgagtatatggatgaagattgccttccgagcgatgaagaaatgacattgttgacgtcat |
42340906 |
T |
|
| Q |
715 |
tcctggtcgcttcttctccttccctctgcaatgattctacctccccttgttgccaattcatctcaccttctcttaccacca |
795 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42340905 |
tcctgatcgcttcttctccttccctttgcaatgattctacctccccttgttgccaattcatctcaccttctcttaccacca |
42340825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 16811286 - 16811243
Alignment:
| Q |
276 |
cctgctttaaccaagaaatcctccaatgtcatctcgccaaaagt |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
16811286 |
cctgctttcaccaagaaatcctccaatgtcatctctcctaaagt |
16811243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University