View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_20 (Length: 281)
Name: NF9169_high_20
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 30430636 - 30430887
Alignment:
| Q |
11 |
cagagatggctgagatttatttaagtggttgaccatcacaatatagnnnnnnnctttatgcatataccacaatcaattctttaactaaatggttaatgta |
110 |
Q |
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| T |
30430636 |
cagagatggctgagatttatttaagtgattgaccatcacattatagtttttt-ctttatgcatataccacaatcaattctttaactaaatggttaaagta |
30430734 |
T |
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| Q |
111 |
ccaagatcttgtaccacaccatggtatagtcaatagtatgaaaacatatcgcttaatgaaatttacatttacattattatttttctttcaaatctacatt |
210 |
Q |
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| T |
30430735 |
ccaagcttttgtaccacaccatgttatagtcaatagtatgaaaacatatccgttaatgaaatttacatttacattattatttttctttcaaatctacatt |
30430834 |
T |
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| Q |
211 |
acaagaaacaaacgccaacaataattgatcatatttataaagctaattaacct |
263 |
Q |
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| T |
30430835 |
acaagaaacaaacgccaacaataattgatcatatttataaagctaattaacct |
30430887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 30415534 - 30415650
Alignment:
| Q |
97 |
aaatggttaatgtaccaagatcttgtaccacaccatggtatagtcaatagtatgaaaacatatcgcttaatgaaatttacatttacattattatttttct |
196 |
Q |
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| T |
30415534 |
aaatggttaaagtaccaagcttttgtgccaccccatgttatagtcaatagtatgaaaacatatctcttaatgaaatttatgtttatatt-tttttttctt |
30415632 |
T |
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| Q |
197 |
ttcaaatctacattacaa |
214 |
Q |
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| T |
30415633 |
ttcaaatctacattacaa |
30415650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 30418914 - 30419020
Alignment:
| Q |
148 |
atgaaaacatatcgcttaatgaaatttacatttacattattatttttctttcaaatctacattacaagaaacaaacgccaacaataattgatcatattta |
247 |
Q |
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| T |
30418914 |
atgaaaacatatctcttaatgaaatttatgtttacatt-tttttttcttttcaaatctacattacaag-aacaaacgctaacaattactgatcgtattta |
30419011 |
T |
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| Q |
248 |
taaagctaa |
256 |
Q |
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||||||||| |
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| T |
30419012 |
taaagctaa |
30419020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 30439721 - 30439908
Alignment:
| Q |
67 |
tatgcatataccacaatcaattctttaactaaatggttaatgtaccaagatcttgtaccacaccatggtatagtcaatagtatgaaaacatatcgcttaa |
166 |
Q |
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| T |
30439721 |
tatgtatataccacaattaaatctattattaaatggttaatgaaccaagagtttgtgccacatcagtttatagtttgtcgtatgaaaacatatatgttaa |
30439820 |
T |
|
| Q |
167 |
tgaaatttacatttacattattatttttctttcaaatctacattacaagaaacaaacgccaacaataattgatcatatttataaagctaa |
256 |
Q |
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| T |
30439821 |
tgaaatttatgtttacattatt--tttgcgttcaaattcacattacaagaaacaaacactaacaataattggtcgtatgtatgaagctaa |
30439908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 30429471 - 30429563
Alignment:
| Q |
67 |
tatgcatataccacaatcaattctttaactaaatggttaatgtaccaagatcttgtaccacaccatggtatagtcaatagtatgaaaacatat |
159 |
Q |
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| T |
30429471 |
tatgcataaaccacaatcaaatctttagctaaatggttaaagaaccaaacatttgtgctactccatgttatagtcaatcgtatgaaaacatat |
30429563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 30440194 - 30440233
Alignment:
| Q |
67 |
tatgcatataccacaatcaattctttaactaaatggttaa |
106 |
Q |
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| T |
30440194 |
tatgcataaaccacaatcaaatctttaactaaatggttaa |
30440233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 30415461 - 30415503
Alignment:
| Q |
64 |
ctttatgcatataccacaatcaattctttaactaaatggttaa |
106 |
Q |
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| T |
30415461 |
ctttatgcatataccaaaatgaaatctttaactaaatggttaa |
30415503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 30414755 - 30414788
Alignment:
| Q |
68 |
atgcatataccacaatcaattctttaactaaatg |
101 |
Q |
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| T |
30414755 |
atgcatataccacaatcaaatctttaactaaatg |
30414788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 30419341 - 30419405
Alignment:
| Q |
90 |
tttaactaaatggttaatgtaccaagatcttgtaccacaccatggtatagtcaatagtatgaaaac |
155 |
Q |
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| T |
30419341 |
tttaactaaatggttaaagaaccaaatatttgtaccacaccatgttatagtcaat-gtatgaaaac |
30419405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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