View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_27 (Length: 234)
Name: NF9169_high_27
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_27 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 11446105 - 11445993
Alignment:
| Q |
109 |
ataaatatggtaagtatatcatcaactt--gtgtcaaaatgcgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgccca |
206 |
Q |
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| T |
11446105 |
ataaatatggtaagtatatcatcaacttttgtgtcaaaatgtgtgttccaacaataacacacatggtaagaaaaagccaaaatcaaacaatttatgccca |
11446006 |
T |
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| Q |
207 |
agttagtaaaaca |
219 |
Q |
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| T |
11446005 |
agttagtaaaaca |
11445993 |
T |
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Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 11546966 - 11547097
Alignment:
| Q |
91 |
catttctctt-ccgaatatataaatatggtaagtatatcatcaactt--gtgtcaaaatgcgtgttccaacaataacacacatggtaagaaaaagccaaa |
187 |
Q |
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|||||||||| || ||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11546966 |
catttctcttgccaaatatataaatattgtatgtatatcatcaacttttgtgtcaaaatgtgtgttccaacaataacacacatggtaagaaaaagccaaa |
11547065 |
T |
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| Q |
188 |
atcaaacaatttatgcccaagttagtaaaaca |
219 |
Q |
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| T |
11547066 |
atcaaacaatttatgcccaagttagtaaaaca |
11547097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 11506860 - 11506910
Alignment:
| Q |
139 |
gtcaaaatgcgtgttccaacaataacacacatggtaagaaaaagccaaaat |
189 |
Q |
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| T |
11506860 |
gtcaaaatgtgtgttcaaacaataacaaacatggtaagaatatgccaaaat |
11506910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 1517 - 1567
Alignment:
| Q |
139 |
gtcaaaatgcgtgttccaacaataacacacatggtaagaaaaagccaaaat |
189 |
Q |
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| T |
1517 |
gtcaaaatgtgtgttcaaacaataacaaacatggtaagaatatgccaaaat |
1567 |
T |
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