View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_33 (Length: 214)
Name: NF9169_high_33
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 40049966 - 40049783
Alignment:
| Q |
13 |
tggtggtggtggttgagggaatgccaatagtggtgtctcatagtaagcttgatagctggtgtaaggatcaactcttccatgaaaagaataccttgaatca |
112 |
Q |
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| T |
40049966 |
tggtggtggtggttgagggaatgccaatagtggtgtctcatagtaagcttgatagctagtgtaaggatcaactcttccatgaaaagaataccttgaatca |
40049867 |
T |
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| Q |
113 |
taaaagggataaggccttaatcttccatgacgatcatatccaacttgaccagctcccataggatgactaggttccaccattctt |
196 |
Q |
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| T |
40049866 |
taaaagggataaggccttaatcttccatgacgatcatatccaatttgaccagctctcataggatgactaggttccaccattctt |
40049783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 33251024 - 33251066
Alignment:
| Q |
50 |
tcatagtaagcttgatagctggtgtaaggatcaactcttccat |
92 |
Q |
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| T |
33251024 |
tcatagtaagcttggtagctagggtaaggatcaactcttccat |
33251066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 1616856 - 1617029
Alignment:
| Q |
17 |
ggtggtggttgagggaatgccaatagtggtgtctcatagtaagcttgatagctggtgtaaggatcaactcttccatgaaaagaataccttgaatcataaa |
116 |
Q |
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| T |
1616856 |
ggtggtggttgagggaatggcaataatggtgtctcatagtaagcttgatagctagtgtaaggatcaactctcccatggaaagaataccttgaatcataaa |
1616955 |
T |
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| Q |
117 |
agggataaggccttaatcttccatgacgatcatatccaacttgaccagctcccataggatgactaggttccaccattctt |
196 |
Q |
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| T |
1616956 |
aaggataaggc------cttccataacgatcatatccaacttgaccagctcccataggatgactaggttccaccattctt |
1617029 |
T |
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