View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_high_6 (Length: 454)
Name: NF9169_high_6
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 9544481 - 9544066
Alignment:
| Q |
12 |
cagagatgagtagggttattacaattctaacatatcgtttgtagacgccgtataaaaatacactcggaataactattcctgtgacaagaagctggtaatt |
111 |
Q |
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| T |
9544481 |
cagaaatgagtagggttattacaattctaacatatcgtttgtagacgccgtataaaaatac--tcggaataactattcctgtgacaagaagctggtaatt |
9544384 |
T |
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| Q |
112 |
gagggccttaataaaaaataatgcaaattaacatccattgctattggtatgtgctatagatgcagtgtcacgcagcagtttcacctccctcttcaaaaat |
211 |
Q |
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| T |
9544383 |
gagggccttga---aaaataatgcaaattaacatccattgctattggtatgtgctatagatgcagtgtcacgcagcagttttacctccctcttcaaaaat |
9544287 |
T |
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| Q |
212 |
gctggtaaagcaaatgcagctttgtgcatctgcagaaagaaacacaatacattactcttttttatttatttggaaagaaaatgaatttgtagaagcaaca |
311 |
Q |
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| T |
9544286 |
gctggtaaagcaaatgcagctttgtgcatctgcagaaagaaacacaatacattactcttttttatttatttggaaagaaaatgaatttgtagaagcaaca |
9544187 |
T |
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| Q |
312 |
ttttggaccatatatattcactaacctctgagttatagaatctaagttctcttgtgtacttagtagtgcctccaagtttttcaataggattgatgggatt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||| |
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| T |
9544186 |
ttttggaccatatatattcactaacctctgagttatagaatctaagttctcttgtgtacttagcagtgccttcaaatatttcaataggattgatgggatt |
9544087 |
T |
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| Q |
412 |
tacaaaatcaactggtggccc |
432 |
Q |
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| T |
9544086 |
tacaaaatcaactggtggccc |
9544066 |
T |
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