View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9169_high_7 (Length: 441)
Name: NF9169_high_7
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 1047086 - 1046666
Alignment:
| Q |
1 |
ggggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1047086 |
ggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaa-cggtcgtaagcaacaagatctaccctattttcagctatagcattga |
1046988 |
T |
|
| Q |
101 |
tcccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1046987 |
tcccgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattttgttttatcatcaat |
1046888 |
T |
|
| Q |
201 |
agtttcattacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046887 |
agtttcattacttattcattctaccatatgacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtct |
1046788 |
T |
|
| Q |
301 |
ccacattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046787 |
ccacattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttac |
1046688 |
T |
|
| Q |
401 |
aacggttttcaagagttccacc |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1046687 |
aacggttttcaagagttccacc |
1046666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 3 - 422
Target Start/End: Complemental strand, 1053756 - 1053341
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| |||||| ||| || | ||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
1053756 |
ggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaa-cgaccataagcaataagatctgccctattttcagctatagcattgatt |
1053658 |
T |
|
| Q |
103 |
ccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatag |
202 |
Q |
| |
|
|| ||| |||||||||||| ||| |||||||| ||||| |||||||| ||||||| || ||||||| | | | |||||| ||||| || |||| | |
|
|
| T |
1053657 |
ccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaagaa |
1053558 |
T |
|
| Q |
203 |
tttcattacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcc |
302 |
Q |
| |
|
|||| | ||| | || |||||||||||||| | |||||||||||||||||||||||| ||||| ||||| |||||| | | |||||||||||||| |
|
|
| T |
1053557 |
tttccattcttggt---tccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctcc |
1053461 |
T |
|
| Q |
303 |
acattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaa |
402 |
Q |
| |
|
||| ||| | || | | ||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1053460 |
acaatctccaaatttttcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaa |
1053361 |
T |
|
| Q |
403 |
cggttttcaagagttccacc |
422 |
Q |
| |
|
|| |||||||| |||||||| |
|
|
| T |
1053360 |
cgattttcaagggttccacc |
1053341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 396
Target Start/End: Complemental strand, 1066113 - 1065724
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||||| ||| ||| || | || ||||||| |||| ||| ||||||||||| ||||||||| |
|
|
| T |
1066113 |
ggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaa-cgaccatatacaacaaggtctgccctgttttcagctatggcattgatc |
1066015 |
T |
|
| Q |
103 |
ccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatag |
202 |
Q |
| |
|
|| || ||| || || | ||| | ||||||||||||| | ||||| ||||||||| |||||| | | ||| | |||| ||||| || ||| || |
|
|
| T |
1066014 |
ccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacag |
1065915 |
T |
|
| Q |
203 |
tttcattacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcc |
302 |
Q |
| |
|
||| | || || ||| ||||||||||| || | |||||||||||||||||||||||| ||||| ||||| |||||| | || || || |||||||| |
|
|
| T |
1065914 |
ttt---tcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctcc |
1065818 |
T |
|
| Q |
303 |
acattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaat |
396 |
Q |
| |
|
||||||| | | || | ||||||||||| | |||||||||||||||| || || ||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
1065817 |
acattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaat |
1065724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 422
Target Start/End: Complemental strand, 1071840 - 1071425
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||| ||| ||| || | || |||| || |||| ||| ||||||||||| ||||||||| |
|
|
| T |
1071840 |
ggagcatcaagtgcaaatctctttggcaaatctggattagctaagaacaaa-cgaccatatacaactaggtctgccctgttttcagctatggcattgatc |
1071742 |
T |
|
| Q |
103 |
ccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatag |
202 |
Q |
| |
|
|| || ||| || || | ||| | ||||||||||||| | ||||| ||||||||| |||||| | | ||| | |||| ||||| || ||| || |
|
|
| T |
1071741 |
ccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacag |
1071642 |
T |
|
| Q |
203 |
tttcattacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcc |
302 |
Q |
| |
|
|| || | || || ||| ||||| |||||||| | |||||| ||||||||||||||||||||||| ||||| |||||| | || || || |||||||| |
|
|
| T |
1071641 |
tt--atca-ttcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctcc |
1071545 |
T |
|
| Q |
303 |
acattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaa |
402 |
Q |
| |
|
||||||| | |||| ||||||||||| | |||||||||||||||| | || ||||||||| ||||||||||||||| ||||||| |||| |||| |
|
|
| T |
1071544 |
acattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaa |
1071445 |
T |
|
| Q |
403 |
cggttttcaagagttccacc |
422 |
Q |
| |
|
||||| ||||| | |||||| |
|
|
| T |
1071444 |
cggttctcaagggatccacc |
1071425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 422
Target Start/End: Original strand, 1640685 - 1640860
Alignment:
| Q |
247 |
tatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactc |
346 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| | | ||||| ||||||||||||||| | | |||| ||||| |||| | | |||||||||| |
|
|
| T |
1640685 |
tatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactc |
1640784 |
T |
|
| Q |
347 |
tttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccacc |
422 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||||||| | ||| ||||||||||||||| |||||||| |
|
|
| T |
1640785 |
tttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccacc |
1640860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 1044498 - 1044333
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| ||| ||| || | ||| | |||||||||| | | |||||||||||||||| |||| |
|
|
| T |
1044498 |
ggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaa-cgaccataaactacaagatctgccttgttttcagctatagcatcgatc |
1044400 |
T |
|
| Q |
103 |
ccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcacca |
169 |
Q |
| |
|
|||||| |||| ||||||| ||| | | ||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
1044399 |
ccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttctcattggcacca |
1044333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 1058805 - 1058634
Alignment:
| Q |
223 |
accatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaa |
322 |
Q |
| |
|
|||| |||||| || | ||||||||||||||||||||||||| |||| ||||| |||||| | | ||||| |||||| |||||||| | | ||||||| |
|
|
| T |
1058805 |
accacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaa |
1058706 |
T |
|
| Q |
323 |
aaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaa |
394 |
Q |
| |
|
||||||||| | | |||||| ||| || ||||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1058705 |
aaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaa |
1058634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 1034111 - 1033956
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||| || |||||||| ||||| |||||||||||||| |||| ||| ||| || | ||| |||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
1034111 |
ggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaa-cgaccataaacaacaagatctgccctattatctgctatagcattgatc |
1034013 |
T |
|
| Q |
103 |
ccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctc |
159 |
Q |
| |
|
|| ||| |||| ||||| | ||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
1034012 |
ccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctc |
1033956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 1059021 - 1058921
Alignment:
| Q |
3 |
ggagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatc |
102 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| | || ||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
1059021 |
ggagcattaagtgcaaatctcttcggcaaatctggattagctaagaa-caaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatc |
1058923 |
T |
|
| Q |
103 |
cc |
104 |
Q |
| |
|
|| |
|
|
| T |
1058922 |
cc |
1058921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 390
Target Start/End: Complemental strand, 1044255 - 1044115
Alignment:
| Q |
250 |
ttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactcttt |
349 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| | || ||||| |||||||| | |||| | | |||| ||||||||||||| | ||||||||| | | |
|
|
| T |
1044255 |
ttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttat |
1044156 |
T |
|
| Q |
350 |
cggcaccaatctcatttacaacagcttcaacaatttccaaa |
390 |
Q |
| |
|
| || || |||||||| ||||| |||||||||| ||||||| |
|
|
| T |
1044155 |
ctgctcctatctcattcacaactgcttcaacaacttccaaa |
1044115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 422
Target Start/End: Complemental strand, 1033868 - 1033696
Alignment:
| Q |
250 |
ttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactcttt |
349 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| | | ||||| ||||||| | ||||| || | ||||||||||| | | ||||||||||||| |
|
|
| T |
1033868 |
ttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactcttt |
1033769 |
T |
|
| Q |
350 |
cggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccacc |
422 |
Q |
| |
|
| || || |||||||| |||||||| ||||||| |||||| ||||| |||||| || ||||| | |||||| |
|
|
| T |
1033768 |
ctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatccacc |
1033696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 1640502 - 1640625
Alignment:
| Q |
61 |
taagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcg |
160 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| |||| ||||| ||| ||| ||||| ||||| ||| || ||||| ||||||| || |||||| |
|
|
| T |
1640502 |
taagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctca |
1640601 |
T |
|
| Q |
161 |
ctggcaccaagttgtgaagacatt |
184 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
1640602 |
ttggcaccaagctgtgaagacatt |
1640625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 44171266 - 44171318
Alignment:
| Q |
337 |
attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaa |
389 |
Q |
| |
|
||||||||| |||| || || |||||||| |||||||||||||||| |||||| |
|
|
| T |
44171266 |
attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa |
44171318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 44191562 - 44191614
Alignment:
| Q |
337 |
attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaa |
389 |
Q |
| |
|
||||||||| |||| || || |||||||| |||||||||||||||| |||||| |
|
|
| T |
44191562 |
attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa |
44191614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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