View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_1 (Length: 941)
Name: NF9169_low_1
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 40856025 - 40855329
Alignment:
| Q |
1 |
tcttacatccaaagcatttgttcctttgtccatcaaatcaatcttcgtcaacacaccaaatgttcgttcacctaagcggaaaatattttgaatgcacagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40856025 |
tcttacatccaaagcatttgttcctttgtccatcaaatcaatcttcgtcaacacaccaaatgttcgttcacctaagcggaaaatattttgaatgcatagt |
40855926 |
T |
|
| Q |
101 |
caagaaaaacaacaatattataagaaaataaatgcatactgtctgtatagttcaagcatgattgtgagaaaaatgccgcaagcataccagcagggtcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40855925 |
caagaaaaacaacaatattataagaaaataaatgcatactgtctgtatagttcaagcatgattgtgagcaaaatgccgcaagcataccagcagggtcaac |
40855826 |
T |
|
| Q |
201 |
ttgtctggaaaccttgatggcatcagatgtcgctacatcttgatttgctggagtaatggccaaaattaagcaattaggctgaaaatcaaagaaaacaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855825 |
ttgtctggaaaccttgatggcatcagatgtcgctacatcttgatttgctggagtaatggccaaaattaagcaattaggctgaaaatcaaagaaaacaaat |
40855726 |
T |
|
| Q |
301 |
taggaatagatgaataaaaggattaaaagtgtggccacacatacaaactaaaaatttcaaattattattacttggacacacattcaatagcattatgtca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855725 |
taggaatagatgaataaaaggattaaaagtgtggccacacgtacaaactaaaaatttcaaattattattacttggacacacattcaatagcattatgtca |
40855626 |
T |
|
| Q |
401 |
gaatggaaaaggttaaaaagccccatatttgggattaagaatgtgaccaactattgcctgtcatcacttgctagtactactgaactgatagaaataaagg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855625 |
gaatggaaaaggttaaaaagccccatatttgggattaagaatgtgaccaactaatgcctgtcatcacttgctagtactactgaactgatagaaataaagg |
40855526 |
T |
|
| Q |
501 |
cagtgaacttgttaatatcatcctccaatatgatttcttcaacatagggctggaaattgctttggaaggccatcacatcagatagccaaagggaaccgaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855525 |
cagtgaacttgttaatatcatcctccaatatgatttcttcaacatagggctggaaattgctttggaaggccatcacatcagatagccaaagggaaccgaa |
40855426 |
T |
|
| Q |
601 |
gttgtataggctagtcttttaattttaactaccttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855425 |
gttgtataggctagtcttttaattttaactaccttatcaacatatgagtggatcaagctttcaatgtcttgaacaatactttctggttgtccctctg |
40855329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 764 - 929
Target Start/End: Complemental strand, 40855262 - 40855097
Alignment:
| Q |
764 |
gattatttgtgaaaagataatgaaaagaaagtgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
863 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855262 |
gattatttgtgaaaagataatgaaaataaagcgtacctacagcgaactttgtcaaaccaggcagatctaccagtgttaagttgacaactatcaacaaata |
40855163 |
T |
|
| Q |
864 |
taaaaatagttagaacaacaacaacaacattaattagatgcagactgtaatcattacaccacaggt |
929 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
40855162 |
taaaaatagttagaacaacaacaacaacattaattagatacggactgtaatcattacaccacaggt |
40855097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 17106893 - 17106964
Alignment:
| Q |
3 |
ttacatccaaagcatttgttcctttgtccatcaaatcaatcttcgtcaacacaccaaatgttcgttcaccta |
74 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||| | ||| |||||||| |||||||| | |||||||| |
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| T |
17106893 |
ttacatctaaagcattagttcctttgtccatcaaatctaactttgtcaacactccaaatgtcctttcaccta |
17106964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 2217161 - 2217101
Alignment:
| Q |
3 |
ttacatccaaagcatttgttcctttgtccatcaaatcaatcttcgtcaacacaccaaatgt |
63 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||| | ||| |||| ||| |||||||| |
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| T |
2217161 |
ttacatccaatgcattagttcctttgtccatcaaatccagctttgtcagcacgccaaatgt |
2217101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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