View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9169_low_12 (Length: 504)

Name: NF9169_low_12
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9169_low_12
NF9169_low_12
[»] chr5 (1 HSPs)
chr5 (247-491)||(26799138-26799392)
[»] chr3 (22 HSPs)
chr3 (247-491)||(10219667-10219921)
chr3 (1-116)||(9838016-9838131)
chr3 (1-116)||(9848894-9849009)
chr3 (18-115)||(10031107-10031204)
chr3 (18-110)||(10126053-10126145)
chr3 (18-115)||(9837812-9837907)
chr3 (18-115)||(9848690-9848785)
chr3 (247-356)||(10125543-10125649)
chr3 (247-356)||(10182888-10182994)
chr3 (18-115)||(11768397-11768494)
chr3 (137-205)||(10030921-10030989)
chr3 (137-205)||(10125872-10125940)
chr3 (14-115)||(10657912-10658010)
chr3 (247-356)||(10259337-10259443)
chr3 (18-115)||(10662627-10662721)
chr3 (137-193)||(10259657-10259713)
chr3 (28-95)||(10259863-10259930)
chr3 (18-89)||(10076299-10076370)
chr3 (53-101)||(10516626-10516674)
chr3 (83-116)||(10434963-10434996)
chr3 (247-312)||(10030636-10030697)
chr3 (83-115)||(10183369-10183401)
[»] scaffold0083 (1 HSPs)
scaffold0083 (18-103)||(50705-50790)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 491
Target Start/End: Complemental strand, 26799392 - 26799138
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaat---gtagactcaagaaaactcacatgtgaatga 343  Q
    ||||| |||||||| ||  ||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  26799392 ttagcttgtgaatgaaccaacaacagtactgtttttggatggttggttggcagtacatatggtaaataatgtagactcaagaaaactcacatgtgaatga 26799293  T
Q  344 atagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacacttataaatagtaattacattgaattatattann 436  Q
    |||||||||||||||| ||||||||       || ||||||  | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||      
T  26799292 atagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacacttgtaaatagtaattacattgaattatattatt 26799193  T
Q  437 nnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 491  Q
          |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  26799192 ttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 26799138  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 491
Target Start/End: Complemental strand, 10219921 - 10219667
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaat---gtagactcaagaaaactcacatgtgaatga 343  Q
    ||||| |||||||| ||  ||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  10219921 ttagcttgtgaatgaaccaacaacagtactgtttttggatggttggttggcagtacatatggtaaataatgtagactcaagaaaactcacatgtgaatga 10219822  T
Q  344 atagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacacttataaatagtaattacattgaattatattann 436  Q
    |||||||||||||||| ||||||||       || ||||||  | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||      
T  10219821 atagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacacttgtaaatagtaattacattgaattatattatt 10219722  T
Q  437 nnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 491  Q
          |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  10219721 ttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 10219667  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 9838131 - 9838016
Alignment:
Q  1 acaatataatgtttttaaaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagtt 100  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9838131 acaatataatgttttgaaaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagtt 9838032  T
Q  101 gcacactcaattaaaa 116  Q
    ||||||||||||||||    
T  9838031 gcacactcaattaaaa 9838016  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 9849009 - 9848894
Alignment:
Q  1 acaatataatgtttttaaaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagtt 100  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9849009 acaatataatgttttgaaaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagtt 9848910  T
Q  101 gcacactcaattaaaa 116  Q
    ||||||||||||||||    
T  9848909 gcacactcaattaaaa 9848894  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 10031204 - 10031107
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  10031204 aaagctggaaagcaaagctcatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttccacactcaactaaa 10031107  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 10126145 - 10126053
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaa 110  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  10126145 aaagctggaaagcaaaggtcatcattgtttaatattggacccacatccctcaaaataattgatacaaagcaaaagaaaaagttgcacactcaa 10126053  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 9837907 - 9837812
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||    
T  9837907 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcacactcaattaaa 9837812  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 9848785 - 9848690
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||    
T  9848785 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcacactcaattaaa 9848690  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 10125649 - 10125543
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 345  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  10125649 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgaat 10125554  T
Q  346 agtaatagtaa 356  Q
    |||||||||||    
T  10125553 agtaatagtaa 10125543  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 10182994 - 10182888
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 345  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  10182994 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgaat 10182899  T
Q  346 agtaatagtaa 356  Q
    |||||||||||    
T  10182898 agtaatagtaa 10182888  T

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Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 11768494 - 11768397
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||| ||||||||||| | | ||||| ||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||| |||||||    
T  11768494 aaagcgggaaagcaaagttcaccattggttaatattggacctacatcccacaaaataattgatacaaagaaaaaggaaaagttgcacacttaattaaa 11768397  T

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Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 10030989 - 10030921
Alignment:
Q  137 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgattaccgaaaaatat 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10030989 agtattacccaacaaaagagataaatgtaataatcatttggtgataagtatatgattgctgaaaaatat 10030921  T

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Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 10125940 - 10125872
Alignment:
Q  137 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgattaccgaaaaatat 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10125940 agtattacccaacaaaagagataaatgtaataatcatttggtgataagtatatgattgctgaaaaatat 10125872  T

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Target: chr3; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10658010 - 10657912
Alignment:
Q  14 tttaaaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaatta 113  Q
    ||||||||||||||||||||| | |||| || |||||   |||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  10658010 tttaaaagctggaaagcaaaggtcatcagtgattaat---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaagttacacactcaatta 10657914  T

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Target: chr3; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 10259443 - 10259337
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 345  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| ||||||||||||||||||| |    
T  10259443 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgagt 10259348  T
Q  346 agtaatagtaa 356  Q
    |||||||||||    
T  10259347 agtaatagtaa 10259337  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 10662721 - 10662627
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||||||||||||||| | |||| || |||||   |||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  10662721 aaagctggaaagcaaagttcatcagtgattaat---ggacccacatccttcaaaataattaatacaaagaaaaaggaaaagttgcacactcaattaaa 10662627  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 10259713 - 10259657
Alignment:
Q  137 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgatt 193  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  10259713 agtattacccaacaaaagagataaatgtaataatcatttgctgataagtatatgatt 10259657  T

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Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10259930 - 10259863
Alignment:
Q  28 agcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaa 95  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  10259930 agcaaaggtcatcattgtttaatattggacccacatccttcaaaataattgatacaaagcaaaagaaa 10259863  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 10076370 - 10076299
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaa 89  Q
    |||||||||||| |||||| |  | || ||||||||||||||||||||| ||||||||||||||||| ||||    
T  10076370 aaagctggaaagtaaagctcagtagtggttaatattggacccacatcccacaaaataattgatacaaggaaa 10076299  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 10516674 - 10516626
Alignment:
Q  53 tggacccacatccctcaaaataattgatacaaagaaacagaaaaagttg 101  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  10516674 tggacccacatccttcaaaataattgatacaaagaaaaaggaaaagttg 10516626  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 10434963 - 10434996
Alignment:
Q  83 aaagaaacagaaaaagttgcacactcaattaaaa 116  Q
    ||||||| ||||||||||||||||||||||||||    
T  10434963 aaagaaaaagaaaaagttgcacactcaattaaaa 10434996  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 10030697 - 10030636
Alignment:
Q  247 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaa 312  Q
    ||||||| |||||| || |||||||||||||| ||||||||    ||| |||||||||||||||||    
T  10030697 ttagcatctgaatgaaccgacaacagtactgtttttggatg----gtttgcagtacatatggtaaa 10030636  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 10183401 - 10183369
Alignment:
Q  83 aaagaaacagaaaaagttgcacactcaattaaa 115  Q
    ||||||| |||||||||||||||||||||||||    
T  10183401 aaagaaaaagaaaaagttgcacactcaattaaa 10183369  T

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Target: scaffold0083 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 50705 - 50790
Alignment:
Q  18 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgca 103  Q
    ||||||||||||||||||| | || || ||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||    
T  50705 aaagctggaaagcaaagctcagcagtggttaatattggacccacatcccacaaaataattgatacaaagaaaaaggaaaaattgca 50790  T

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